miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34534_fru-let-7j:mirbase
Length = 82
Score = 58.0 bits (29), Expect = 1e-09
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 4 tgaggtagttgtttgtacagtttttagggtctgttattctgccctgttaaggagctaact 63
|||||||||| ||||||||| ||| ||||||||| ||||||||| | |||||||||||
Sbjct: 4 tgaggtagttttttgtacag-tttgagggtctgtgattctgccccatacaggagctaact 62
Query: 64 gtaca 68
|||||
Sbjct: 63 gtaca 67
>34682_tni-let-7j:mirbase
Length = 82
Score = 58.0 bits (29), Expect = 1e-09
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 4 tgaggtagttgtttgtacagtttttagggtctgttattctgccctgttaaggagctaact 63
|||||||||| ||||||||| ||| ||||||||| ||||||||| | |||||||||||
Sbjct: 4 tgaggtagttttttgtacag-tttgagggtctgtgattctgccccatacaggagctaact 62
Query: 64 gtaca 68
|||||
Sbjct: 63 gtaca 67
>25682_xtr-let-7g:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 tgaggtagttgtttgtacagttt 26
|||||||||||||||||||||||
Sbjct: 4 tgaggtagttgtttgtacagttt 26
>25875_gga-let-7g:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 2e-04
Identities = 66/80 (82%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 tgaggtagttgtttgtacagtttttagggtctgttattctgccctgttaaggagctaact 63
||||||||| ||||||||||||| ||||||| | || | ||| || ||||| |||||
Sbjct: 5 tgaggtagtagtttgtacagtttg-agggtctatgataccacccggtacaggagataact 63
Query: 64 gtacagactactgccttgcc 83
|||||| | |||||||||||
Sbjct: 64 gtacaggccactgccttgcc 83
>26385_tgu-let-7g-1:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 66/80 (82%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 tgaggtagttgtttgtacagtttttagggtctgttattctgccctgttaaggagctaact 63
||||||||| ||||||||||||| ||||||| | || | ||| || ||||| |||||
Sbjct: 11 tgaggtagtagtttgtacagtttg-agggtctatgataccacccggtacaggagataact 69
Query: 64 gtacagactactgccttgcc 83
|||||| | |||||||||||
Sbjct: 70 gtacaggccactgccttgcc 89
>26386_tgu-let-7g-2:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 2e-04
Identities = 66/80 (82%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 tgaggtagttgtttgtacagtttttagggtctgttattctgccctgttaaggagctaact 63
||||||||| ||||||||||||| ||||||| | || | ||| || ||||| |||||
Sbjct: 11 tgaggtagtagtttgtacagtttg-agggtctatgataccacccggtacaggagataact 69
Query: 64 gtacagactactgccttgcc 83
|||||| | |||||||||||
Sbjct: 70 gtacaggccactgccttgcc 89
>26611_cfa-let-7g:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 2e-04
Identities = 66/80 (82%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 tgaggtagttgtttgtacagtttttagggtctgttattctgccctgttaaggagctaact 63
||||||||| ||||||||||||| ||||||| | || | ||| || ||||| |||||
Sbjct: 1 tgaggtagtagtttgtacagtttg-agggtctatgataccacccggtacaggagataact 59
Query: 64 gtacagactactgccttgcc 83
|||||| | |||||||||||
Sbjct: 60 gtacaggccactgccttgcc 79
>26935_eca-let-7g:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 2e-04
Identities = 66/80 (82%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 tgaggtagttgtttgtacagtttttagggtctgttattctgccctgttaaggagctaact 63
||||||||| ||||||||||||| ||||||| | || | ||| || ||||| |||||
Sbjct: 7 tgaggtagtagtttgtacagtttg-agggtctatgataccacccggtacaggagataact 65
Query: 64 gtacagactactgccttgcc 83
|||||| | |||||||||||
Sbjct: 66 gtacaggccactgccttgcc 85
>27325_mdo-let-7g:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 2e-04
Identities = 66/80 (82%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 tgaggtagttgtttgtacagtttttagggtctgttattctgccctgttaaggagctaact 63
||||||||| ||||||||||||| ||||||| | || | ||| || ||||| |||||
Sbjct: 5 tgaggtagtagtttgtacagtttg-agggtctatgataccacccggtacaggagataact 63
Query: 64 gtacagactactgccttgcc 83
|||||| | |||||||||||
Sbjct: 64 gtacaggccactgccttgcc 83
>27638_mml-let-7g:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 66/80 (82%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 tgaggtagttgtttgtacagtttttagggtctgttattctgccctgttaaggagctaact 63
||||||||| ||||||||||||| ||||||| | || | ||| || ||||| |||||
Sbjct: 5 tgaggtagtagtttgtacagtttg-agggtctatgataccacccggtacaggagataact 63
Query: 64 gtacagactactgccttgcc 83
|||||| | |||||||||||
Sbjct: 64 gtacaggccactgccttgcc 83
>28348_hsa-let-7g:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 66/80 (82%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 tgaggtagttgtttgtacagtttttagggtctgttattctgccctgttaaggagctaact 63
||||||||| ||||||||||||| ||||||| | || | ||| || ||||| |||||
Sbjct: 5 tgaggtagtagtttgtacagtttg-agggtctatgataccacccggtacaggagataact 63
Query: 64 gtacagactactgccttgcc 83
|||||| | |||||||||||
Sbjct: 64 gtacaggccactgccttgcc 83
>30135_ptr-let-7g:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 2e-04
Identities = 66/80 (82%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 tgaggtagttgtttgtacagtttttagggtctgttattctgccctgttaaggagctaact 63
||||||||| ||||||||||||| ||||||| | || | ||| || ||||| |||||
Sbjct: 5 tgaggtagtagtttgtacagtttg-agggtctatgataccacccggtacaggagataact 63
Query: 64 gtacagactactgccttgcc 83
|||||| | |||||||||||
Sbjct: 64 gtacaggccactgccttgcc 83
>30740_ppy-let-7g:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 66/80 (82%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 tgaggtagttgtttgtacagtttttagggtctgttattctgccctgttaaggagctaact 63
||||||||| ||||||||||||| ||||||| | || | ||| || ||||| |||||
Sbjct: 5 tgaggtagtagtttgtacagtttg-agggtctatgataccacccggtacaggagataact 63
Query: 64 gtacagactactgccttgcc 83
|||||| | |||||||||||
Sbjct: 64 gtacaggccactgccttgcc 83
>31761_mmu-let-7g:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 2e-04
Identities = 66/80 (82%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 tgaggtagttgtttgtacagtttttagggtctgttattctgccctgttaaggagctaact 63
||||||||| ||||||||||||| ||||||| | || | ||| || ||||| |||||
Sbjct: 7 tgaggtagtagtttgtacagtttg-agggtctatgataccacccggtacaggagataact 65
Query: 64 gtacagactactgccttgcc 83
|||||| | |||||||||||
Sbjct: 66 gtacaggccactgccttgcc 85
>33117_bta-let-7g:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 2e-04
Identities = 66/80 (82%), Gaps = 1/80 (1%)
Strand = Plus / Plus
Query: 4 tgaggtagttgtttgtacagtttttagggtctgttattctgccctgttaaggagctaact 63
||||||||| ||||||||||||| ||||||| | || | ||| || ||||| |||||
Sbjct: 5 tgaggtagtagtttgtacagtttg-agggtctatgataccacccggtacaggagataact 63
Query: 64 gtacagactactgccttgcc 83
|||||| | |||||||||||
Sbjct: 64 gtacaggccactgccttgcc 83
>31415_oan-let-7g:mirbase
Length = 91
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 4 tgaggtagttgtttgtacagttt 26
||||||||| |||||||||||||
Sbjct: 8 tgaggtagtagtttgtacagttt 30
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 53 aggagctaactgtacagactactgccttgcc 83
||||| ||||||||||| | |||||||||||
Sbjct: 56 aggagataactgtacaggccactgccttgcc 86
>33903_ssc-let-7g:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 4 tgaggtagttgtttgtacagttt 26
||||||||| |||||||||||||
Sbjct: 4 tgaggtagtagtttgtacagttt 26
