miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25695_xtr-mir-10b:mirbase
Length = 88
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
|||||||||||||||||||||||||||||||||
Sbjct: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
>34542_fru-mir-10b-2:mirbase
Length = 84
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
|||||||||||||||||||||||||||||||||
Sbjct: 4 gtctatatgtaccctgtagaaccgaatttgtgt 36
>34689_tni-mir-10b-1:mirbase
Length = 83
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
|||||||||||||||||||||||||||||||||
Sbjct: 4 gtctatatgtaccctgtagaaccgaatttgtgt 36
>25890_gga-mir-10b:mirbase
Length = 110
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
|||||||| ||||||||||||||||||||||||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgt 50
>26622_cfa-mir-10b:mirbase
Length = 101
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
|||||||| ||||||||||||||||||||||||
Sbjct: 9 gtctatatataccctgtagaaccgaatttgtgt 41
>27332_mdo-mir-10b:mirbase
Length = 111
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
|||||||| ||||||||||||||||||||||||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgt 50
>27649_mml-mir-10b:mirbase
Length = 110
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
|||||||| ||||||||||||||||||||||||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgt 50
>28169_mne-mir-10b:mirbase
Length = 109
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
|||||||| ||||||||||||||||||||||||
Sbjct: 17 gtctatatataccctgtagaaccgaatttgtgt 49
>28257_ggo-mir-10b:mirbase
Length = 110
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
|||||||| ||||||||||||||||||||||||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgt 50
>28359_hsa-mir-10b:mirbase
Length = 110
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
|||||||| ||||||||||||||||||||||||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgt 50
>30041_ppa-mir-10b:mirbase
Length = 110
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
|||||||| ||||||||||||||||||||||||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgt 50
>30145_ptr-mir-10b:mirbase
Length = 109
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
|||||||| ||||||||||||||||||||||||
Sbjct: 17 gtctatatataccctgtagaaccgaatttgtgt 49
>30750_ppy-mir-10b:mirbase
Length = 110
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
|||||||| ||||||||||||||||||||||||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgt 50
>31424_oan-mir-10b:mirbase
Length = 107
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
|||||||| ||||||||||||||||||||||||
Sbjct: 16 gtctatatataccctgtagaaccgaatttgtgt 48
>32657_rno-mir-10b:mirbase
Length = 109
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
|||||||| ||||||||||||||||||||||||
Sbjct: 17 gtctatatataccctgtagaaccgaatttgtgt 49
>33127_bta-mir-10b:mirbase
Length = 99
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
|||||||| ||||||||||||||||||||||||
Sbjct: 11 gtctatatataccctgtagaaccgaatttgtgt 43
>33910_ssc-mir-10b:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
|||||||| ||||||||||||||||||||||||
Sbjct: 1 gtctatatataccctgtagaaccgaatttgtgt 33
>34198_dre-mir-10b-1:mirbase
Length = 78
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
|||||||| ||||||||||||||||||||||||
Sbjct: 1 gtctatatataccctgtagaaccgaatttgtgt 33
>34201_dre-mir-10d:mirbase
Length = 118
Score = 56.0 bits (28), Expect = 4e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 4 gtcgtctatatgtaccctgtagaaccgaatttgtgt 39
||||||||||| |||||||||||||||||| |||||
Sbjct: 16 gtcgtctatatataccctgtagaaccgaatgtgtgt 51
>24650_bfl-mir-10a:mirbase
Length = 76
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 ctatatgtaccctgtagaaccgaatttgtgt 39
|||||||||||||||||| ||||||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgt 31
>25889_gga-mir-10a:mirbase
Length = 74
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 ctatatgtaccctgtagaaccgaatttgtgt 39
|||||||||||||||||| ||||||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgt 31
>34541_fru-mir-10b-1:mirbase
Length = 70
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 atatgtaccctgtagaaccgaatttgtgt 39
|||| ||||||||||||||||||||||||
Sbjct: 1 atatataccctgtagaaccgaatttgtgt 29
>34690_tni-mir-10b-2:mirbase
Length = 70
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 atatgtaccctgtagaaccgaatttgtgt 39
|||| ||||||||||||||||||||||||
Sbjct: 1 atatataccctgtagaaccgaatttgtgt 29
>25694_xtr-mir-10a:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 tatgtaccctgtagaaccgaatttgtgt 39
||||||||||||||| ||||||||||||
Sbjct: 18 tatgtaccctgtagatccgaatttgtgt 45
>26944_eca-mir-10b:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 taccctgtagaaccgaatttgtgt 39
||||||||||||||||||||||||
Sbjct: 5 taccctgtagaaccgaatttgtgt 28
>31774_mmu-mir-10b:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 taccctgtagaaccgaatttgtgt 39
||||||||||||||||||||||||
Sbjct: 5 taccctgtagaaccgaatttgtgt 28
>34197_dre-mir-10a:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 tctatatgtaccctgtagaaccgaatttgtgt 39
||||||| ||||||||||| ||||||||||||
Sbjct: 10 tctatatataccctgtagatccgaatttgtgt 41
>34544_fru-mir-10d:mirbase
Length = 112
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 4 gtcgtctatatgtaccctgtagaaccgaatttgtgt 39
|||||||||| |||||||||||||||||| |||||
Sbjct: 16 gtcgtctataaataccctgtagaaccgaatgtgtgt 51
>34692_tni-mir-10d:mirbase
Length = 120
Score = 48.1 bits (24), Expect = 1e-06
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 4 gtcgtctatatgtaccctgtagaaccgaatttgtgt 39
|||||||||| |||||||||||||||||| |||||
Sbjct: 16 gtcgtctatacataccctgtagaaccgaatgtgtgt 51
>25696_xtr-mir-10c:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 10 tatatgtaccctgtagaaccgaatttgtgt 39
|||||| ||||||||||| |||||||||||
Sbjct: 1 tatatgcaccctgtagaatcgaatttgtgt 30
>34809_spu-mir-10:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 accctgtagaaccgaatttgtgtcc 41
|||||||||| ||||||||||||||
Sbjct: 27 accctgtagatccgaatttgtgtcc 51
>38853_lgi-mir-10:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 taccctgtagaaccgaatttgtgt 39
||||||||||| ||||||||||||
Sbjct: 21 taccctgtagatccgaatttgtgt 44
>26621_cfa-mir-10:mirbase
Length = 63
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 taccctgtagaaccgaatttgtgt 39
||||||||||| ||||||||||||
Sbjct: 1 taccctgtagatccgaatttgtgt 24
>26943_eca-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 taccctgtagaaccgaatttgtgt 39
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>27331_mdo-mir-10a:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 taccctgtagaaccgaatttgtgt 39
||||||||||| ||||||||||||
Sbjct: 15 taccctgtagatccgaatttgtgt 38
>27477_age-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 taccctgtagaaccgaatttgtgt 39
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>27587_sla-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 taccctgtagaaccgaatttgtgt 39
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>27648_mml-mir-10a:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 taccctgtagaaccgaatttgtgt 39
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>28256_ggo-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 taccctgtagaaccgaatttgtgt 39
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>28358_hsa-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 taccctgtagaaccgaatttgtgt 39
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>30040_ppa-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 taccctgtagaaccgaatttgtgt 39
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>30144_ptr-mir-10a:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 taccctgtagaaccgaatttgtgt 39
||||||||||| ||||||||||||
Sbjct: 21 taccctgtagatccgaatttgtgt 44
>31423_oan-mir-10a:mirbase
Length = 122
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 taccctgtagaaccgaatttgtgt 39
||||||||||| ||||||||||||
Sbjct: 28 taccctgtagatccgaatttgtgt 51
>31773_mmu-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 taccctgtagaaccgaatttgtgt 39
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>32655_rno-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 taccctgtagaaccgaatttgtgt 39
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>32656_rno-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 taccctgtagaaccgaatttgtgt 39
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>32716_rno-mir-122:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 33 tttgtgtccaaaacatcaaa 52
||||||||||||||||||||
Sbjct: 33 tttgtgtccaaaacatcaaa 52
>33091_rno-mir-3591:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 33 tttgtgtccaaaacatcaaa 52
||||||||||||||||||||
Sbjct: 64 tttgtgtccaaaacatcaaa 45
>33126_bta-mir-10a:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 taccctgtagaaccgaatttgtgt 39
||||||||||| ||||||||||||
Sbjct: 22 taccctgtagatccgaatttgtgt 45
>33909_ssc-mir-10a:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 taccctgtagaaccgaatttgtgt 39
||||||||||| ||||||||||||
Sbjct: 9 taccctgtagatccgaatttgtgt 32
>34200_dre-mir-10c:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 8 tctatatgtaccctgtagaaccgaatttgtgt 39
||||||| ||||||||||| ||| ||||||||
Sbjct: 8 tctatatataccctgtagatccggatttgtgt 39
>34543_fru-mir-10c:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 8 tctatatgtaccctgtagaaccgaatttgtgt 39
||||||| ||||||||||| ||| ||||||||
Sbjct: 7 tctatatctaccctgtagatccggatttgtgt 38
>34691_tni-mir-10c:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 8 tctatatgtaccctgtagaaccgaatttgtgt 39
||||||| ||||||||||| ||| ||||||||
Sbjct: 13 tctatatctaccctgtagatccggatttgtgt 44
