miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31423_oan-mir-10a:mirbase
Length = 122
Score = 75.8 bits (38), Expect = 5e-15
Identities = 74/86 (86%)
Strand = Plus / Plus
Query: 2 ctgtcatctatatataccctgtagatccggatttgtgtaaacagacgcacagtcacaaat 61
||||| ||| ||||||||||||||||||| |||||||||| || | |||||||||
Sbjct: 14 ctgtcttctgtatataccctgtagatccgaatttgtgtaaggagtttcgtggtcacaaat 73
Query: 62 tcgtatctaggggagtatgtagttga 87
|||||||||||||| |||||||||||
Sbjct: 74 tcgtatctaggggaatatgtagttga 99
>34197_dre-mir-10a:mirbase
Length = 99
Score = 73.8 bits (37), Expect = 2e-14
Identities = 74/86 (86%), Gaps = 4/86 (4%)
Strand = Plus / Plus
Query: 2 ctgtcatctatatataccctgtagatccggatttgtgtaaacagacgcacagtcacaaat 61
||||||||||||||||||||||||||||| |||||||| || | |||||| |||||
Sbjct: 4 ctgtcatctatatataccctgtagatccgaatttgtgtgaata----tacagtcgcaaat 59
Query: 62 tcgtatctaggggagtatgtagttga 87
|||| ||| ||||| |||||||||||
Sbjct: 60 tcgtgtcttggggaatatgtagttga 85
>34543_fru-mir-10c:mirbase
Length = 102
Score = 65.9 bits (33), Expect = 5e-12
Identities = 39/41 (95%)
Strand = Plus / Plus
Query: 2 ctgtcatctatatataccctgtagatccggatttgtgtaaa 42
||||| ||||||| |||||||||||||||||||||||||||
Sbjct: 1 ctgtcttctatatctaccctgtagatccggatttgtgtaaa 41
>34691_tni-mir-10c:mirbase
Length = 108
Score = 63.9 bits (32), Expect = 2e-11
Identities = 38/40 (95%)
Strand = Plus / Plus
Query: 2 ctgtcatctatatataccctgtagatccggatttgtgtaa 41
||||| ||||||| ||||||||||||||||||||||||||
Sbjct: 7 ctgtcttctatatctaccctgtagatccggatttgtgtaa 46
>25889_gga-mir-10a:mirbase
Length = 74
Score = 61.9 bits (31), Expect = 8e-11
Identities = 65/75 (86%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 9 ctatatataccctgtagatccggatttgtgtaaacagacgcacagtcacaaattcgtatc 68
|||||| ||||||||||||||| ||||||||||| || | ||||||||||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgtaaag-gaagttgggtcacaaattcgtatc 59
Query: 69 taggggagtatgtag 83
||||||| |||||||
Sbjct: 60 taggggaatatgtag 74
>26943_eca-mir-10a:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 53 gtcacaaattcgtatctaggggagtatgtagttga 87
||||||||||||||||||||||| |||||||||||
Sbjct: 59 gtcacaaattcgtatctaggggaatatgtagttga 93
>27331_mdo-mir-10a:mirbase
Length = 90
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 53 gtcacaaattcgtatctaggggagtatgtagttga 87
||||||||||||||||||||||| |||||||||||
Sbjct: 52 gtcacaaattcgtatctaggggaatatgtagttga 86
>27477_age-mir-10a:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 53 gtcacaaattcgtatctaggggagtatgtagttga 87
||||||||||||||||||||||| |||||||||||
Sbjct: 59 gtcacaaattcgtatctaggggaatatgtagttga 93
>27587_sla-mir-10a:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 53 gtcacaaattcgtatctaggggagtatgtagttga 87
||||||||||||||||||||||| |||||||||||
Sbjct: 59 gtcacaaattcgtatctaggggaatatgtagttga 93
>27648_mml-mir-10a:mirbase
Length = 109
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 53 gtcacaaattcgtatctaggggagtatgtagttga 87
||||||||||||||||||||||| |||||||||||
Sbjct: 59 gtcacaaattcgtatctaggggaatatgtagttga 93
>28256_ggo-mir-10a:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 53 gtcacaaattcgtatctaggggagtatgtagttga 87
||||||||||||||||||||||| |||||||||||
Sbjct: 59 gtcacaaattcgtatctaggggaatatgtagttga 93
>28358_hsa-mir-10a:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 53 gtcacaaattcgtatctaggggagtatgtagttga 87
||||||||||||||||||||||| |||||||||||
Sbjct: 59 gtcacaaattcgtatctaggggaatatgtagttga 93
>30144_ptr-mir-10a:mirbase
Length = 109
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 53 gtcacaaattcgtatctaggggagtatgtagttga 87
||||||||||||||||||||||| |||||||||||
Sbjct: 58 gtcacaaattcgtatctaggggaatatgtagttga 92
>31773_mmu-mir-10a:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 53 gtcacaaattcgtatctaggggagtatgtagttga 87
||||||||||||||||||||||| |||||||||||
Sbjct: 59 gtcacaaattcgtatctaggggaatatgtagttga 93
>32655_rno-mir-10a:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 53 gtcacaaattcgtatctaggggagtatgtagttga 87
||||||||||||||||||||||| |||||||||||
Sbjct: 59 gtcacaaattcgtatctaggggaatatgtagttga 93
>32656_rno-mir-10a:mirbase
Length = 110
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 53 gtcacaaattcgtatctaggggagtatgtagttga 87
||||||||||||||||||||||| |||||||||||
Sbjct: 59 gtcacaaattcgtatctaggggaatatgtagttga 93
>33909_ssc-mir-10a:mirbase
Length = 80
Score = 61.9 bits (31), Expect = 8e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 53 gtcacaaattcgtatctaggggagtatgtagttga 87
||||||||||||||||||||||| |||||||||||
Sbjct: 46 gtcacaaattcgtatctaggggaatatgtagttga 80
>33126_bta-mir-10a:mirbase
Length = 109
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 54 tcacaaattcgtatctaggggagtatgtagttga 87
|||||||||||||||||||||| |||||||||||
Sbjct: 60 tcacaaattcgtatctaggggaatatgtagttga 93
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 2 ctgtcatctatatataccctgtagatccggatttgtgtaa 41
||||| ||| ||||||||||||||||||| ||||||||||
Sbjct: 8 ctgtcttctgtatataccctgtagatccgaatttgtgtaa 47
>30040_ppa-mir-10a:mirbase
Length = 110
Score = 56.0 bits (28), Expect = 5e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 2 ctgtcatctatatataccctgtagatccggatttgtgtaa 41
||||| ||| ||||||||||||||||||| ||||||||||
Sbjct: 8 ctgtcttctgtatataccctgtagatccgaatttgtgtaa 47
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 53 gtcacaaattcgtatctaggggagtatgtagttga 87
|||||| |||||||||||||||| |||||||||||
Sbjct: 59 gtcacacattcgtatctaggggaatatgtagttga 93
>30749_ppy-mir-10a:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 53 gtcacaaattcgtatctaggggagtatgtagttga 87
||||||||||||||| ||||||| |||||||||||
Sbjct: 59 gtcacaaattcgtatttaggggaatatgtagttga 93
>34690_tni-mir-10b-2:mirbase
Length = 70
Score = 50.1 bits (25), Expect = 3e-07
Identities = 59/69 (85%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 11 atatataccctgtagatccggatttgtgtaaacagacgcacagtcacaaattcgtatcta 70
|||||||||||||||| ||| |||||||| | || | |||||||||| ||||| ||||
Sbjct: 1 atatataccctgtagaaccgaatttgtgtgatca-agtcacagtcacagattcgattcta 59
Query: 71 ggggagtat 79
|||||||||
Sbjct: 60 ggggagtat 68
>25890_gga-mir-10b:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 tctatatataccctgtagatccggatttgtgt 39
||||||||||||||||||| ||| ||||||||
Sbjct: 19 tctatatataccctgtagaaccgaatttgtgt 50
>26622_cfa-mir-10b:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 tctatatataccctgtagatccggatttgtgt 39
||||||||||||||||||| ||| ||||||||
Sbjct: 10 tctatatataccctgtagaaccgaatttgtgt 41
>27332_mdo-mir-10b:mirbase
Length = 111
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 tctatatataccctgtagatccggatttgtgt 39
||||||||||||||||||| ||| ||||||||
Sbjct: 19 tctatatataccctgtagaaccgaatttgtgt 50
>27649_mml-mir-10b:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 tctatatataccctgtagatccggatttgtgt 39
||||||||||||||||||| ||| ||||||||
Sbjct: 19 tctatatataccctgtagaaccgaatttgtgt 50
>28169_mne-mir-10b:mirbase
Length = 109
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 tctatatataccctgtagatccggatttgtgt 39
||||||||||||||||||| ||| ||||||||
Sbjct: 18 tctatatataccctgtagaaccgaatttgtgt 49
>28257_ggo-mir-10b:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 tctatatataccctgtagatccggatttgtgt 39
||||||||||||||||||| ||| ||||||||
Sbjct: 19 tctatatataccctgtagaaccgaatttgtgt 50
>28359_hsa-mir-10b:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 tctatatataccctgtagatccggatttgtgt 39
||||||||||||||||||| ||| ||||||||
Sbjct: 19 tctatatataccctgtagaaccgaatttgtgt 50
>30041_ppa-mir-10b:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 tctatatataccctgtagatccggatttgtgt 39
||||||||||||||||||| ||| ||||||||
Sbjct: 19 tctatatataccctgtagaaccgaatttgtgt 50
>30145_ptr-mir-10b:mirbase
Length = 109
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 tctatatataccctgtagatccggatttgtgt 39
||||||||||||||||||| ||| ||||||||
Sbjct: 18 tctatatataccctgtagaaccgaatttgtgt 49
>30750_ppy-mir-10b:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 tctatatataccctgtagatccggatttgtgt 39
||||||||||||||||||| ||| ||||||||
Sbjct: 19 tctatatataccctgtagaaccgaatttgtgt 50
>31424_oan-mir-10b:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 tctatatataccctgtagatccggatttgtgt 39
||||||||||||||||||| ||| ||||||||
Sbjct: 17 tctatatataccctgtagaaccgaatttgtgt 48
>32657_rno-mir-10b:mirbase
Length = 109
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 tctatatataccctgtagatccggatttgtgt 39
||||||||||||||||||| ||| ||||||||
Sbjct: 18 tctatatataccctgtagaaccgaatttgtgt 49
>33127_bta-mir-10b:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 tctatatataccctgtagatccggatttgtgt 39
||||||||||||||||||| ||| ||||||||
Sbjct: 12 tctatatataccctgtagaaccgaatttgtgt 43
>33910_ssc-mir-10b:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 tctatatataccctgtagatccggatttgtgt 39
||||||||||||||||||| ||| ||||||||
Sbjct: 2 tctatatataccctgtagaaccgaatttgtgt 33
>34198_dre-mir-10b-1:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 8 tctatatataccctgtagatccggatttgtgt 39
||||||||||||||||||| ||| ||||||||
Sbjct: 2 tctatatataccctgtagaaccgaatttgtgt 33
>24650_bfl-mir-10a:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 9 ctatatataccctgtagatccggatttgtgt 39
|||||| ||||||||||||||| ||||||||
Sbjct: 1 ctatatgtaccctgtagatccgaatttgtgt 31
>25694_xtr-mir-10a:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 1 cctgtcatctatatataccctgtagatccggatttgtgt 39
|||||| ||| ||| ||||||||||||||| ||||||||
Sbjct: 7 cctgtcctctgtatgtaccctgtagatccgaatttgtgt 45
>26621_cfa-mir-10:mirbase
Length = 63
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 gtcacaaattcgtatctagggga 75
|||||||||||||||||||||||
Sbjct: 38 gtcacaaattcgtatctagggga 60
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 taccctgtagatccggatttgtgtaa 41
||||||||||||||| ||||||||||
Sbjct: 1 taccctgtagatccgaatttgtgtaa 26
>38853_lgi-mir-10:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 16 taccctgtagatccggatttgtgta 40
||||||||||||||| |||||||||
Sbjct: 21 taccctgtagatccgaatttgtgta 45
>34541_fru-mir-10b-1:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 atatataccctgtagatccggatttgtgt 39
|||||||||||||||| ||| ||||||||
Sbjct: 1 atatataccctgtagaaccgaatttgtgt 29
>25695_xtr-mir-10b:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 8 tctatatataccctgtagatccggatttgtgt 39
||||||| ||||||||||| ||| ||||||||
Sbjct: 8 tctatatgtaccctgtagaaccgaatttgtgt 39
>26944_eca-mir-10b:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 12 tatataccctgtagatccggatttgtgt 39
||||||||||||||| ||| ||||||||
Sbjct: 1 tatataccctgtagaaccgaatttgtgt 28
>31774_mmu-mir-10b:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 12 tatataccctgtagatccggatttgtgt 39
||||||||||||||| ||| ||||||||
Sbjct: 1 tatataccctgtagaaccgaatttgtgt 28
>34199_dre-mir-10b-2:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 8 tctatatataccctgtagatccggatttgtgt 39
||||||| ||||||||||| ||| ||||||||
Sbjct: 8 tctatatgtaccctgtagaaccgaatttgtgt 39
>34201_dre-mir-10d:mirbase
Length = 118
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 8 tctatatataccctgtagatccggatttgtgt 39
||||||||||||||||||| ||| || |||||
Sbjct: 20 tctatatataccctgtagaaccgaatgtgtgt 51
>34542_fru-mir-10b-2:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 8 tctatatataccctgtagatccggatttgtgt 39
||||||| ||||||||||| ||| ||||||||
Sbjct: 5 tctatatgtaccctgtagaaccgaatttgtgt 36
>34689_tni-mir-10b-1:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 8 tctatatataccctgtagatccggatttgtgt 39
||||||| ||||||||||| ||| ||||||||
Sbjct: 5 tctatatgtaccctgtagaaccgaatttgtgt 36
