miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32657_rno-mir-10b:mirbase
Length = 109
Score = 75.8 bits (38), Expect = 6e-15
Identities = 79/90 (87%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 19 gtctatatataccctgtagaaccgaatgtgtgt-ttacacagcaaattcacagattcggt 77
||||||||||||||||||||||||||| ||||| ||| || || | ||||||||||| |
Sbjct: 17 gtctatatataccctgtagaaccgaatttgtgtggtaccca-catagtcacagattcgat 75
Query: 78 tttaggggagtatatggacgatgcaaaaac 107
| ||||||| ||||||| ||||||||||||
Sbjct: 76 tctaggggaatatatggtcgatgcaaaaac 105
>34198_dre-mir-10b-1:mirbase
Length = 78
Score = 71.9 bits (36), Expect = 1e-13
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 19 gtctatatataccctgtagaaccgaatgtgtgtttacacagcaaattcacagattcggtt 78
||||||||||||||||||||||||||| ||||| | | | | ||||||||||||| ||
Sbjct: 1 gtctatatataccctgtagaaccgaatttgtgtgaaaaaataacattcacagattcgatt 60
Query: 79 ttaggggagtatatgg 94
|||||||||||||||
Sbjct: 61 ctaggggagtatatgg 76
>26622_cfa-mir-10b:mirbase
Length = 101
Score = 67.9 bits (34), Expect = 2e-12
Identities = 78/90 (86%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 19 gtctatatataccctgtagaaccgaatgtgtgt-ttacacagcaaattcacagattcggt 77
||||||||||||||||||||||||||| ||||| || || || | ||||||||||| |
Sbjct: 9 gtctatatataccctgtagaaccgaatttgtgtggtatcca-catagtcacagattcgat 67
Query: 78 tttaggggagtatatggacgatgcaaaaac 107
| ||||||| ||||||| ||||||||||||
Sbjct: 68 tctaggggaatatatggtcgatgcaaaaac 97
>31424_oan-mir-10b:mirbase
Length = 107
Score = 67.9 bits (34), Expect = 2e-12
Identities = 78/90 (86%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 19 gtctatatataccctgtagaaccgaatgtgtgt-ttacacagcaaattcacagattcggt 77
||||||||||||||||||||||||||| ||||| || || || | ||||||||||| |
Sbjct: 16 gtctatatataccctgtagaaccgaatttgtgtggtattca-catagtcacagattcgat 74
Query: 78 tttaggggagtatatggacgatgcaaaaac 107
| ||||||| ||||||| ||||||||||||
Sbjct: 75 tctaggggaatatatggtcgatgcaaaaac 104
>28359_hsa-mir-10b:mirbase
Length = 110
Score = 65.9 bits (33), Expect = 6e-12
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 19 gtctatatataccctgtagaaccgaatgtgtgtttacacagcaaattcacagattcggtt 78
||||||||||||||||||||||||||| ||||| | | | | ||||||||||| ||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgtggtatccgtatagtcacagattcgatt 77
Query: 79 ttaggggagtatatggacgatgcaaaaac 107
||||||| ||||||| ||||||||||||
Sbjct: 78 ctaggggaatatatggtcgatgcaaaaac 106
>30041_ppa-mir-10b:mirbase
Length = 110
Score = 65.9 bits (33), Expect = 6e-12
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 19 gtctatatataccctgtagaaccgaatgtgtgtttacacagcaaattcacagattcggtt 78
||||||||||||||||||||||||||| ||||| | | | | ||||||||||| ||
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgtggtatccgtatagtcacagattcgatt 77
Query: 79 ttaggggagtatatggacgatgcaaaaac 107
||||||| ||||||| ||||||||||||
Sbjct: 78 ctaggggaatatatggtcgatgcaaaaac 106
>30145_ptr-mir-10b:mirbase
Length = 109
Score = 65.9 bits (33), Expect = 6e-12
Identities = 75/89 (84%)
Strand = Plus / Plus
Query: 19 gtctatatataccctgtagaaccgaatgtgtgtttacacagcaaattcacagattcggtt 78
||||||||||||||||||||||||||| ||||| | | | | ||||||||||| ||
Sbjct: 17 gtctatatataccctgtagaaccgaatttgtgtggtatccgtatagtcacagattcgatt 76
Query: 79 ttaggggagtatatggacgatgcaaaaac 107
||||||| ||||||| ||||||||||||
Sbjct: 77 ctaggggaatatatggtcgatgcaaaaac 105
>34544_fru-mir-10d:mirbase
Length = 112
Score = 65.9 bits (33), Expect = 6e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 15 cgtcgtctatatataccctgtagaaccgaatgtgtgt 51
||||||||||| |||||||||||||||||||||||||
Sbjct: 15 cgtcgtctataaataccctgtagaaccgaatgtgtgt 51
>34692_tni-mir-10d:mirbase
Length = 120
Score = 65.9 bits (33), Expect = 6e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 15 cgtcgtctatatataccctgtagaaccgaatgtgtgt 51
||||||||||| |||||||||||||||||||||||||
Sbjct: 15 cgtcgtctatacataccctgtagaaccgaatgtgtgt 51
>25890_gga-mir-10b:mirbase
Length = 110
Score = 60.0 bits (30), Expect = 4e-10
Identities = 77/90 (85%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 19 gtctatatataccctgtagaaccgaatgtgtgt-ttacacagcaaattcacagattcggt 77
||||||||||||||||||||||||||| ||||| || || | | ||||||||||| |
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgtgatattca-tatagtcacagattcgat 76
Query: 78 tttaggggagtatatggacgatgcaaaaac 107
| ||||||| ||||||| ||||||||||||
Sbjct: 77 tctaggggaatatatggtcgatgcaaaaac 106
>27332_mdo-mir-10b:mirbase
Length = 111
Score = 60.0 bits (30), Expect = 4e-10
Identities = 77/90 (85%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 19 gtctatatataccctgtagaaccgaatgtgtgt-ttacacagcaaattcacagattcggt 77
||||||||||||||||||||||||||| ||||| || | || | ||||||||||| |
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgtggtattta-catagtcacagattcgat 76
Query: 78 tttaggggagtatatggacgatgcaaaaac 107
| ||||||| ||||||| ||||||||||||
Sbjct: 77 tctaggggaatatatggtcgatgcaaaaac 106
>27649_mml-mir-10b:mirbase
Length = 110
Score = 60.0 bits (30), Expect = 4e-10
Identities = 77/90 (85%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 19 gtctatatataccctgtagaaccgaatgtgtgt-ttacacagcaaattcacagattcggt 77
||||||||||||||||||||||||||| ||||| || || | | ||||||||||| |
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgtggtatcca-tatagtcacagattcgat 76
Query: 78 tttaggggagtatatggacgatgcaaaaac 107
| ||||||| ||||||| ||||||||||||
Sbjct: 77 tctaggggaatatatggtcgatgcaaaaac 106
>28169_mne-mir-10b:mirbase
Length = 109
Score = 60.0 bits (30), Expect = 4e-10
Identities = 77/90 (85%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 19 gtctatatataccctgtagaaccgaatgtgtgt-ttacacagcaaattcacagattcggt 77
||||||||||||||||||||||||||| ||||| || || | | ||||||||||| |
Sbjct: 17 gtctatatataccctgtagaaccgaatttgtgtggtatcca-tatagtcacagattcgat 75
Query: 78 tttaggggagtatatggacgatgcaaaaac 107
| ||||||| ||||||| ||||||||||||
Sbjct: 76 tctaggggaatatatggtcgatgcaaaaac 105
>28257_ggo-mir-10b:mirbase
Length = 110
Score = 60.0 bits (30), Expect = 4e-10
Identities = 77/90 (85%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 19 gtctatatataccctgtagaaccgaatgtgtgt-ttacacagcaaattcacagattcggt 77
||||||||||||||||||||||||||| ||||| || || | | ||||||||||| |
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgtggtatcca-tatagtcacagattcgat 76
Query: 78 tttaggggagtatatggacgatgcaaaaac 107
| ||||||| ||||||| ||||||||||||
Sbjct: 77 tctaggggaatatatggtcgatgcaaaaac 106
>30750_ppy-mir-10b:mirbase
Length = 110
Score = 60.0 bits (30), Expect = 4e-10
Identities = 77/90 (85%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 19 gtctatatataccctgtagaaccgaatgtgtgt-ttacacagcaaattcacagattcggt 77
||||||||||||||||||||||||||| ||||| || || | | ||||||||||| |
Sbjct: 18 gtctatatataccctgtagaaccgaatttgtgtggtatcca-tatagtcacagattcgat 76
Query: 78 tttaggggagtatatggacgatgcaaaaac 107
| ||||||| ||||||| ||||||||||||
Sbjct: 77 tctaggggaatatatggtcgatgcaaaaac 106
>33127_bta-mir-10b:mirbase
Length = 99
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 19 gtctatatataccctgtagaaccgaatgtgtgt 51
||||||||||||||||||||||||||| |||||
Sbjct: 11 gtctatatataccctgtagaaccgaatttgtgt 43
Score = 54.0 bits (27), Expect = 2e-08
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 65 tcacagattcggttttaggggagtatatggacgatgcaaaaac 107
||||||||||| || ||||||| ||||||| ||||||||||||
Sbjct: 57 tcacagattcgattctaggggaatatatggtcgatgcaaaaac 99
>33910_ssc-mir-10b:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 19 gtctatatataccctgtagaaccgaatgtgtgt 51
||||||||||||||||||||||||||| |||||
Sbjct: 1 gtctatatataccctgtagaaccgaatttgtgt 33
>34199_dre-mir-10b-2:mirbase
Length = 92
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 16 gtcgtctatatataccctgtagaaccgaatgtgtgt 51
||||||||||| |||||||||||||||||| |||||
Sbjct: 4 gtcgtctatatgtaccctgtagaaccgaatttgtgt 39
>34541_fru-mir-10b-1:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 9e-08
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 23 atatataccctgtagaaccgaatgtgtgtttacacagcaaattcacagattcggttttag 82
||||||||||||||||||||||| ||||| | |||| ||||||||||| || |||
Sbjct: 1 atatataccctgtagaaccgaatttgtgtgatggcgtcaaagtcacagattcgattctag 60
Query: 83 gggagtatat 92
||||||||||
Sbjct: 61 gggagtatat 70
>34690_tni-mir-10b-2:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 9e-08
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 23 atatataccctgtagaaccgaatgtgtgtttacacagcaaattcacagattcggttttag 82
||||||||||||||||||||||| ||||| || || | ||||||||||| || |||
Sbjct: 1 atatataccctgtagaaccgaatttgtgtgatcaagtcacagtcacagattcgattctag 60
Query: 83 gggagtatat 92
||||||||||
Sbjct: 61 gggagtatat 70
>25695_xtr-mir-10b:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 19 gtctatatataccctgtagaaccgaatgtgtgt 51
|||||||| |||||||||||||||||| |||||
Sbjct: 7 gtctatatgtaccctgtagaaccgaatttgtgt 39
>34542_fru-mir-10b-2:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 19 gtctatatataccctgtagaaccgaatgtgtgt 51
|||||||| |||||||||||||||||| |||||
Sbjct: 4 gtctatatgtaccctgtagaaccgaatttgtgt 36
>34689_tni-mir-10b-1:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 19 gtctatatataccctgtagaaccgaatgtgtgt 51
|||||||| |||||||||||||||||| |||||
Sbjct: 4 gtctatatgtaccctgtagaaccgaatttgtgt 36
>26944_eca-mir-10b:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 24 tatataccctgtagaaccgaatgtgtgt 51
|||||||||||||||||||||| |||||
Sbjct: 1 tatataccctgtagaaccgaatttgtgt 28
>31774_mmu-mir-10b:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 24 tatataccctgtagaaccgaatgtgtgt 51
|||||||||||||||||||||| |||||
Sbjct: 1 tatataccctgtagaaccgaatttgtgt 28
>34197_dre-mir-10a:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 20 tctatatataccctgtagaaccgaatgtgtgt 51
||||||||||||||||||| |||||| |||||
Sbjct: 10 tctatatataccctgtagatccgaatttgtgt 41
>26943_eca-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 24 tatataccctgtagaaccgaatgtgtgt 51
||||||||||||||| |||||| |||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>27331_mdo-mir-10a:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 24 tatataccctgtagaaccgaatgtgtgt 51
||||||||||||||| |||||| |||||
Sbjct: 11 tatataccctgtagatccgaatttgtgt 38
>27477_age-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 24 tatataccctgtagaaccgaatgtgtgt 51
||||||||||||||| |||||| |||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>27587_sla-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 24 tatataccctgtagaaccgaatgtgtgt 51
||||||||||||||| |||||| |||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>27648_mml-mir-10a:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 24 tatataccctgtagaaccgaatgtgtgt 51
||||||||||||||| |||||| |||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>28256_ggo-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 24 tatataccctgtagaaccgaatgtgtgt 51
||||||||||||||| |||||| |||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>28358_hsa-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 24 tatataccctgtagaaccgaatgtgtgt 51
||||||||||||||| |||||| |||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>30040_ppa-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 24 tatataccctgtagaaccgaatgtgtgt 51
||||||||||||||| |||||| |||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>30144_ptr-mir-10a:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 24 tatataccctgtagaaccgaatgtgtgt 51
||||||||||||||| |||||| |||||
Sbjct: 17 tatataccctgtagatccgaatttgtgt 44
>31423_oan-mir-10a:mirbase
Length = 122
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 24 tatataccctgtagaaccgaatgtgtgt 51
||||||||||||||| |||||| |||||
Sbjct: 24 tatataccctgtagatccgaatttgtgt 51
>31773_mmu-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 24 tatataccctgtagaaccgaatgtgtgt 51
||||||||||||||| |||||| |||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>32655_rno-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 24 tatataccctgtagaaccgaatgtgtgt 51
||||||||||||||| |||||| |||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>32656_rno-mir-10a:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 24 tatataccctgtagaaccgaatgtgtgt 51
||||||||||||||| |||||| |||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>33126_bta-mir-10a:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 24 tatataccctgtagaaccgaatgtgtgt 51
||||||||||||||| |||||| |||||
Sbjct: 18 tatataccctgtagatccgaatttgtgt 45
>33909_ssc-mir-10a:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 24 tatataccctgtagaaccgaatgtgtgt 51
||||||||||||||| |||||| |||||
Sbjct: 5 tatataccctgtagatccgaatttgtgt 32
>34200_dre-mir-10c:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 20 tctatatataccctgtagaaccgaatgtgtgt 51
||||||||||||||||||| ||| || |||||
Sbjct: 8 tctatatataccctgtagatccggatttgtgt 39
