miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34693_tni-mir-15a:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 11 ctgtagcagcacagaatggtttgtgagtta 40
|||||||||||| |||||||||||||||||
Sbjct: 10 ctgtagcagcacggaatggtttgtgagtta 39
>25697_xtr-mir-15a:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 2e-07
Identities = 50/57 (87%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 13 gtagcagcacagaatggtttgtgagttataacgggggtgcaggccgtactgtgctgc 69
||||||||||| ||||||||||| |||| || | |||||||||| |||||||||||
Sbjct: 13 gtagcagcacataatggtttgtgggtta-cacagaggtgcaggccatactgtgctgc 68
>34203_dre-mir-15a-2:mirbase
Length = 102
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 tgtagcagcacagaatggtttgtg 35
||||||||||||||||||||||||
Sbjct: 23 tgtagcagcacagaatggtttgtg 46
>31425_oan-mir-15a:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 gtagcagcacagaatggtttgtgagtt 39
||||||||||| |||||||||||||||
Sbjct: 20 gtagcagcacataatggtttgtgagtt 46
>34545_fru-mir-15a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 11 ctgtagcagcacagaatggtttgtgagtta 40
|||||||||||| |||||||||||| ||||
Sbjct: 10 ctgtagcagcacggaatggtttgtgggtta 39
>34204_dre-mir-15b:mirbase
Length = 134
Score = 42.1 bits (21), Expect = 6e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 11 ctgtagcagcacagaatggtttgtgagttataa 43
||||||||||||| ||||||||| ||||||||
Sbjct: 36 ctgtagcagcacatcatggtttgtaagttataa 68
>25891_gga-mir-15a:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 gtagcagcacagaatggtttgtg 35
||||||||||| |||||||||||
Sbjct: 13 gtagcagcacataatggtttgtg 35
>26396_tgu-mir-15a:mirbase
Length = 71
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 gtagcagcacagaatggtttgtg 35
||||||||||| |||||||||||
Sbjct: 10 gtagcagcacataatggtttgtg 32
>27478_age-mir-15a:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 gtagcagcacagaatggtttgtg 35
||||||||||| |||||||||||
Sbjct: 13 gtagcagcacataatggtttgtg 35
>27539_lla-mir-15a:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 gtagcagcacagaatggtttgtg 35
||||||||||| |||||||||||
Sbjct: 13 gtagcagcacataatggtttgtg 35
>27588_sla-mir-15a:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 gtagcagcacagaatggtttgtg 35
||||||||||| |||||||||||
Sbjct: 13 gtagcagcacataatggtttgtg 35
>27650_mml-mir-15a:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 gtagcagcacagaatggtttgtg 35
||||||||||| |||||||||||
Sbjct: 13 gtagcagcacataatggtttgtg 35
>28170_mne-mir-15a:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 gtagcagcacagaatggtttgtg 35
||||||||||| |||||||||||
Sbjct: 13 gtagcagcacataatggtttgtg 35
>28258_ggo-mir-15a:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 gtagcagcacagaatggtttgtg 35
||||||||||| |||||||||||
Sbjct: 13 gtagcagcacataatggtttgtg 35
>28360_hsa-mir-15a:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 gtagcagcacagaatggtttgtg 35
||||||||||| |||||||||||
Sbjct: 13 gtagcagcacataatggtttgtg 35
>30042_ppa-mir-15a:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 gtagcagcacagaatggtttgtg 35
||||||||||| |||||||||||
Sbjct: 13 gtagcagcacataatggtttgtg 35
>30146_ptr-mir-15a:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 gtagcagcacagaatggtttgtg 35
||||||||||| |||||||||||
Sbjct: 13 gtagcagcacataatggtttgtg 35
>30751_ppy-mir-15a:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 gtagcagcacagaatggtttgtg 35
||||||||||| |||||||||||
Sbjct: 13 gtagcagcacataatggtttgtg 35
>31393_lca-mir-15a:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 gtagcagcacagaatggtttgtg 35
||||||||||| |||||||||||
Sbjct: 13 gtagcagcacataatggtttgtg 35
>31775_mmu-mir-15a:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 gtagcagcacagaatggtttgtg 35
||||||||||| |||||||||||
Sbjct: 14 gtagcagcacataatggtttgtg 36
>33128_bta-mir-15a:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 gtagcagcacagaatggtttgtg 35
||||||||||| |||||||||||
Sbjct: 13 gtagcagcacataatggtttgtg 35
>33911_ssc-mir-15a:mirbase
Length = 79
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 gtagcagcacagaatggtttgtg 35
||||||||||| |||||||||||
Sbjct: 11 gtagcagcacataatggtttgtg 33
