miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34547_fru-mir-16:mirbase
Length = 89
Score = 63.9 bits (32), Expect = 3e-11
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 35 gctgtagcagcacgtaaatattggagtcaaagcact-tgcgaatcctccagtattgaccg 93
||||||||||||||||||||||||||| || || || || || ||||||||||||| ||
Sbjct: 9 gctgtagcagcacgtaaatattggagttaaggctctctgtgatacctccagtattgatcg 68
Query: 94 tgctgctg 101
||||||||
Sbjct: 69 tgctgctg 76
>34695_tni-mir-16:mirbase
Length = 72
Score = 56.0 bits (28), Expect = 7e-09
Identities = 56/64 (87%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattggagtcaaagcact-tgcgaatcctccagtattgaccgtgct 97
||||||||||||||||||||||| || || || || || ||||||||||||| ||||||
Sbjct: 1 tagcagcacgtaaatattggagttaaggctctctgtgatacctccagtattgatcgtgct 60
Query: 98 gctg 101
||||
Sbjct: 61 gctg 64
>25429_pma-mir-16:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 38 gtagcagcacgtaaatattggagt 61
||||||||||||||||||||||||
Sbjct: 9 gtagcagcacgtaaatattggagt 32
>33131_bta-mir-16b:mirbase
Length = 93
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 35 gctgtagcagcacgtaaatattgg 58
||||||||||||||||||||||||
Sbjct: 13 gctgtagcagcacgtaaatattgg 36
>26400_tgu-mir-16b:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattggagt 61
|||||||||||||||||||||||
Sbjct: 11 tagcagcacgtaaatattggagt 33
>25700_xtr-mir-16a:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>25701_xtr-mir-16b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>25894_gga-mir-16-1:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>25895_gga-mir-16-2:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 17 tagcagcacgtaaatattgg 36
>26399_tgu-mir-16a:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 11 tagcagcacgtaaatattgg 30
>26625_cfa-mir-16-1:mirbase
Length = 65
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattgg 20
>26626_cfa-mir-16-2:mirbase
Length = 65
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattgg 20
>26947_eca-mir-16:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29
>26948_eca-mir-16-2:mirbase
Length = 63
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattgg 20
>27334_mdo-mir-16:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>27480_age-mir-16:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>27541_lla-mir-16:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>27589_sla-mir-16:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>27652_mml-mir-16-1:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>27653_mml-mir-16-2:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29
>28172_mne-mir-16:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>28260_ggo-mir-16:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>28362_hsa-mir-16-1:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>28363_hsa-mir-16-2:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29
>30044_ppa-mir-16:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>30148_ptr-mir-16-1:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>30149_ptr-mir-16-2:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 9 tagcagcacgtaaatattgg 28
>30753_ppy-mir-16:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>30754_ppy-mir-16-2:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29
>31394_lca-mir-16:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>31428_oan-mir-16a:mirbase
Length = 132
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 29 tagcagcacgtaaatattgg 48
Score = 40.1 bits (20), Expect = 4e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 79 ctccagtattgaccgtgctgctggagttaggc 110
||||||||||||| ||||||||| ||| ||||
Sbjct: 69 ctccagtattgactgtgctgctgaagtaaggc 100
>31429_oan-mir-16b:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 21 tagcagcacgtaaatattgg 40
>31777_mmu-mir-16-1:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 16 tagcagcacgtaaatattgg 35
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 78 cctccagtattgaccgtgctgctg 101
|||||||||||||| |||||||||
Sbjct: 55 cctccagtattgactgtgctgctg 78
>31778_mmu-mir-16-2:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 17 tagcagcacgtaaatattgg 36
>32659_rno-mir-16:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 17 tagcagcacgtaaatattgg 36
>33130_bta-mir-16a:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>33913_ssc-mir-16-1:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 8 tagcagcacgtaaatattgg 27
>33914_ssc-mir-16-2:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 9 tagcagcacgtaaatattgg 28
>34206_dre-mir-16a:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 39 tagcagcacgtaaatattgg 58
||||||||||||||||||||
Sbjct: 13 tagcagcacgtaaatattgg 32
