miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34550_fru-mir-18:mirbase
Length = 76
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 5 ttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtg 64
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
Query: 65 ctccttctggca 76
||||||||||||
Sbjct: 61 ctccttctggca 72
>34698_tni-mir-18:mirbase
Length = 76
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 5 ttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtg 64
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
Query: 65 ctccttctggca 76
||||||||||||
Sbjct: 61 ctccttctggca 72
>31780_mmu-mir-18a:mirbase
Length = 96
Score = 129 bits (65), Expect = 3e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 4 tttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagt 63
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 10 tttgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagt 69
Query: 64 gctccttctggca 76
|||||||||||||
Sbjct: 70 gctccttctggca 82
>32664_rno-mir-18a:mirbase
Length = 96
Score = 129 bits (65), Expect = 3e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 4 tttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagt 63
||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 10 tttgttctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagt 69
Query: 64 gctccttctggca 76
|||||||||||||
Sbjct: 70 gctccttctggca 82
>25705_xtr-mir-18a:mirbase
Length = 87
Score = 121 bits (61), Expect = 8e-29
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 4 tttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagt 63
||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 7 tttgtcctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagt 66
Query: 64 gctccttctggca 76
|||||||||||||
Sbjct: 67 gctccttctggca 79
>25899_gga-mir-18a:mirbase
Length = 93
Score = 121 bits (61), Expect = 8e-29
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 4 tttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagt 63
||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 7 tttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagt 66
Query: 64 gctccttctggca 76
|||||||||||||
Sbjct: 67 gctccttctggca 79
>26628_cfa-mir-18a:mirbase
Length = 92
Score = 121 bits (61), Expect = 8e-29
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 4 tttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagt 63
||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 7 tttgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagt 66
Query: 64 gctccttctggca 76
|||||||||||||
Sbjct: 67 gctccttctggca 79
>33917_ssc-mir-18a:mirbase
Length = 92
Score = 121 bits (61), Expect = 8e-29
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 4 tttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagt 63
||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 7 tttgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagt 66
Query: 64 gctccttctggca 76
|||||||||||||
Sbjct: 67 gctccttctggca 79
>27337_mdo-mir-18:mirbase
Length = 72
Score = 119 bits (60), Expect = 3e-28
Identities = 69/72 (95%)
Strand = Plus / Plus
Query: 5 ttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtg 64
|||| ||||||||||||||||||||||||||||||||| ||||| |||||||||||||||
Sbjct: 1 ttgttctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtg 60
Query: 65 ctccttctggca 76
||||||||||||
Sbjct: 61 ctccttctggca 72
>27483_age-mir-18:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tctggca 76
|||||||
Sbjct: 65 tctggca 71
>27544_lla-mir-18:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tctggca 76
|||||||
Sbjct: 65 tctggca 71
>27592_sla-mir-18:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tctggca 76
|||||||
Sbjct: 65 tctggca 71
>27656_mml-mir-18:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tctggca 76
|||||||
Sbjct: 65 tctggca 71
>28175_mne-mir-18:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tctggca 76
|||||||
Sbjct: 65 tctggca 71
>28263_ggo-mir-18:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tctggca 76
|||||||
Sbjct: 65 tctggca 71
>28365_hsa-mir-18a:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tctggca 76
|||||||
Sbjct: 65 tctggca 71
>30047_ppa-mir-18:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tctggca 76
|||||||
Sbjct: 65 tctggca 71
>30152_ptr-mir-18a:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tctggca 76
|||||||
Sbjct: 65 tctggca 71
>30757_ppy-mir-18:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tctggca 76
|||||||
Sbjct: 65 tctggca 71
>31397_lca-mir-18:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tctggca 76
|||||||
Sbjct: 65 tctggca 71
>33134_bta-mir-18a:mirbase
Length = 71
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgctcct 69
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 70 tctggca 76
|||||||
Sbjct: 65 tctggca 71
>26404_tgu-mir-18a:mirbase
Length = 72
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 4 tttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagt 63
||||| ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 4 tttgtactaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagt 63
Query: 64 gctccttct 72
|||||||||
Sbjct: 64 gctccttct 72
>34212_dre-mir-18b:mirbase
Length = 87
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 8 tgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgctc 67
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 10 tgctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgccc 69
Query: 68 cttctggca 76
|||||||||
Sbjct: 70 cttctggca 78
>26950_eca-mir-18a:mirbase
Length = 61
Score = 105 bits (53), Expect = 5e-24
Identities = 59/61 (96%)
Strand = Plus / Plus
Query: 11 taaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgctcctt 70
|||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct: 1 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 60
Query: 71 c 71
|
Sbjct: 61 c 61
>31432_oan-mir-18:mirbase
Length = 130
Score = 89.7 bits (45), Expect = 3e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 5 ttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtg 64
||||| ||||||||||||||||||| ||||||||||| ||| | |||||||||||| ||
Sbjct: 23 ttgtgttaaggtgcatctagtgcagttagtgaagtagcttagaatctactgccctaaatg 82
Query: 65 ctccttctggcac 77
|||||||||||||
Sbjct: 83 ctccttctggcac 95
>25900_gga-mir-18b:mirbase
Length = 84
Score = 81.8 bits (41), Expect = 7e-17
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 5 ttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtg 64
||||| ||||||||||||||||||| |||||| |||| ||| | |||||||||||| ||
Sbjct: 9 ttgtgttaaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatg 68
Query: 65 ctccttctggcac 77
|||||||||||||
Sbjct: 69 ctccttctggcac 81
>25656_xla-mir-18:mirbase
Length = 79
Score = 73.8 bits (37), Expect = 2e-14
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 5 ttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtg 64
||||| ||||||||||||||||||| |||||| ||| ||||| |||||||||||| ||
Sbjct: 3 ttgtgttaaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatg 62
Query: 65 ctccttctggcac 77
|||||| ||||||
Sbjct: 63 ctccttttggcac 75
>25706_xtr-mir-18b:mirbase
Length = 78
Score = 73.8 bits (37), Expect = 2e-14
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 5 ttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtg 64
||||| ||||||||||||||||||| |||||| ||| ||||| |||||||||||| ||
Sbjct: 3 ttgtgttaaggtgcatctagtgcagttagtgacatagtgtagcatctactgccctaaatg 62
Query: 65 ctccttctggcac 77
|||||| ||||||
Sbjct: 63 ctccttttggcac 75
>33135_bta-mir-18b:mirbase
Length = 75
Score = 73.8 bits (37), Expect = 2e-14
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 5 ttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtg 64
||||| ||||||||||||||||||| |||||||| || || | |||||||||||| ||
Sbjct: 2 ttgtgttaaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatg 61
Query: 65 ctccttctggcac 77
|||||||||||||
Sbjct: 62 ctccttctggcac 74
>33918_ssc-mir-18b:mirbase
Length = 83
Score = 73.8 bits (37), Expect = 2e-14
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 5 ttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtg 64
||||| ||||||||||||||||||| |||||||| || ||| | |||||||||||| ||
Sbjct: 5 ttgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatg 64
Query: 65 ctccttctggcac 77
| |||||||||||
Sbjct: 65 ccccttctggcac 77
>27657_mml-mir-18b:mirbase
Length = 71
Score = 69.9 bits (35), Expect = 3e-13
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 6 tgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgc 65
|||| ||||||||||||||||||| |||||||| || ||| | |||||||||||| |||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 66 tccttctggca 76
||||||||||
Sbjct: 61 cccttctggca 71
>28366_hsa-mir-18b:mirbase
Length = 71
Score = 69.9 bits (35), Expect = 3e-13
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 6 tgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgc 65
|||| ||||||||||||||||||| |||||||| || ||| | |||||||||||| |||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 66 tccttctggca 76
||||||||||
Sbjct: 61 cccttctggca 71
>30758_ppy-mir-18b:mirbase
Length = 71
Score = 69.9 bits (35), Expect = 3e-13
Identities = 62/71 (87%)
Strand = Plus / Plus
Query: 6 tgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgc 65
|||| ||||||||||||||||||| |||||||| || ||| | |||||||||||| |||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 66 tccttctggca 76
||||||||||
Sbjct: 61 cccttctggca 71
>26629_cfa-mir-18b:mirbase
Length = 77
Score = 63.9 bits (32), Expect = 2e-11
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 6 tgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgc 65
|||| ||||||||||||||||||| |||||||| | ||| |||||||||||||| |||
Sbjct: 3 tgtgttaaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgc 62
Query: 66 tccttctggcac 77
||||| |||||
Sbjct: 63 cccttccggcac 74
>25433_pma-mir-18a:mirbase
Length = 97
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 ttgtgctaaggtgcatctagtgcagatagt 34
||||||||||||||||||||||||||||||
Sbjct: 12 ttgtgctaaggtgcatctagtgcagatagt 41
>30153_ptr-mir-18b:mirbase
Length = 70
Score = 60.0 bits (30), Expect = 3e-10
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 6 tgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgc 65
|||| ||||||||||||||||||| |||||||| || ||| | |||||||||||| |||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 66 tccttctggc 75
|| ||||||
Sbjct: 61 cccatctggc 70
>26951_eca-mir-18b:mirbase
Length = 59
Score = 54.0 bits (27), Expect = 2e-08
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 11 taaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaa 61
||||||||||||||||||| |||||||| || ||| | ||||||||||||
Sbjct: 1 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaa 51
>26405_tgu-mir-18b:mirbase
Length = 132
Score = 50.1 bits (25), Expect = 2e-07
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 5 ttgtgctaaggtgcatctagtgcagatagtgaagtag 41
||||| ||||||||||||||||||| |||||| ||||
Sbjct: 95 ttgtgttaaggtgcatctagtgcagttagtgatgtag 131
>31781_mmu-mir-18b:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 2e-07
Identities = 61/73 (83%)
Strand = Plus / Plus
Query: 5 ttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtg 64
||||| ||||||||||||||||| | |||||||| || || | |||||||||||| ||
Sbjct: 5 ttgtgttaaggtgcatctagtgctgttagtgaagcagcttacaatctactgccctaaatg 64
Query: 65 ctccttctggcac 77
| |||||| ||||
Sbjct: 65 ccccttctcgcac 77
>34213_dre-mir-18c:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 8 tgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgc 56
||||||||||||||| ||| || ||||||||||| |||| | |||||||
Sbjct: 8 tgctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
>25434_pma-mir-18b:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 aaggtgcatctagtgcagatagtg 35
||||||||| ||||||||||||||
Sbjct: 16 aaggtgcatttagtgcagatagtg 39
