miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34550_fru-mir-18:mirbase
Length = 76
Score = 129 bits (65), Expect = 4e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 10 tgctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgccc 69
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4 tgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgctc 63
Query: 70 cttctggcataag 82
|||||||||||||
Sbjct: 64 cttctggcataag 76
>34698_tni-mir-18:mirbase
Length = 76
Score = 129 bits (65), Expect = 4e-31
Identities = 71/73 (97%)
Strand = Plus / Plus
Query: 10 tgctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgccc 69
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 4 tgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtgctc 63
Query: 70 cttctggcataag 82
|||||||||||||
Sbjct: 64 cttctggcataag 76
>34211_dre-mir-18a:mirbase
Length = 83
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 10 tgctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgccc 69
||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||| |
Sbjct: 8 tgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtgctc 67
Query: 70 cttctggca 78
|||||||||
Sbjct: 68 cttctggca 76
>31780_mmu-mir-18a:mirbase
Length = 96
Score = 109 bits (55), Expect = 3e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
||||||||||| |||||||||||||||| |||||||||| |||||||||||||||| |||
Sbjct: 16 ctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcct 75
Query: 72 tctggcataag 82
|||||||||||
Sbjct: 76 tctggcataag 86
>32664_rno-mir-18a:mirbase
Length = 96
Score = 109 bits (55), Expect = 3e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
||||||||||| |||||||||||||||| |||||||||| |||||||||||||||| |||
Sbjct: 16 ctaaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcct 75
Query: 72 tctggcataag 82
|||||||||||
Sbjct: 76 tctggcataag 86
>25899_gga-mir-18a:mirbase
Length = 93
Score = 101 bits (51), Expect = 8e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 72
Query: 72 tctggcataag 82
|||||||||||
Sbjct: 73 tctggcataag 83
>26628_cfa-mir-18a:mirbase
Length = 92
Score = 101 bits (51), Expect = 8e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 72
Query: 72 tctggcataag 82
|||||||||||
Sbjct: 73 tctggcataag 83
>33917_ssc-mir-18a:mirbase
Length = 92
Score = 101 bits (51), Expect = 8e-23
Identities = 66/71 (92%)
Strand = Plus / Plus
Query: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 72
Query: 72 tctggcataag 82
|||||||||||
Sbjct: 73 tctggcataag 83
>25705_xtr-mir-18a:mirbase
Length = 87
Score = 99.6 bits (50), Expect = 3e-22
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 72
Query: 72 tctggcataa 81
||||||||||
Sbjct: 73 tctggcataa 82
>27337_mdo-mir-18:mirbase
Length = 72
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 6 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 65
Query: 72 tctggca 78
|||||||
Sbjct: 66 tctggca 72
>27483_age-mir-18:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 72 tctggca 78
|||||||
Sbjct: 65 tctggca 71
>27544_lla-mir-18:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 72 tctggca 78
|||||||
Sbjct: 65 tctggca 71
>27592_sla-mir-18:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 72 tctggca 78
|||||||
Sbjct: 65 tctggca 71
>27656_mml-mir-18:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 72 tctggca 78
|||||||
Sbjct: 65 tctggca 71
>28175_mne-mir-18:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 72 tctggca 78
|||||||
Sbjct: 65 tctggca 71
>28263_ggo-mir-18:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 72 tctggca 78
|||||||
Sbjct: 65 tctggca 71
>28365_hsa-mir-18a:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 72 tctggca 78
|||||||
Sbjct: 65 tctggca 71
>30047_ppa-mir-18:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 72 tctggca 78
|||||||
Sbjct: 65 tctggca 71
>30152_ptr-mir-18a:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 72 tctggca 78
|||||||
Sbjct: 65 tctggca 71
>30757_ppy-mir-18:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 72 tctggca 78
|||||||
Sbjct: 65 tctggca 71
>31397_lca-mir-18:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 72 tctggca 78
|||||||
Sbjct: 65 tctggca 71
>33134_bta-mir-18a:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 2e-20
Identities = 62/67 (92%)
Strand = Plus / Plus
Query: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 64
Query: 72 tctggca 78
|||||||
Sbjct: 65 tctggca 71
>26404_tgu-mir-18a:mirbase
Length = 72
Score = 85.7 bits (43), Expect = 5e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 12 ctaaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
||||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| |||
Sbjct: 10 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcct 69
Query: 72 tct 74
|||
Sbjct: 70 tct 72
>26950_eca-mir-18a:mirbase
Length = 61
Score = 81.8 bits (41), Expect = 7e-17
Identities = 56/61 (91%)
Strand = Plus / Plus
Query: 13 taaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccctt 72
|||||||||| |||||||||||||||| |||| ||||| |||||||||||||||| ||||
Sbjct: 1 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 60
Query: 73 c 73
|
Sbjct: 61 c 61
>25656_xla-mir-18:mirbase
Length = 79
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 13 taaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccctt 72
|||||||||| |||||||| |||||| |||| ||||| |||||||||||| ||| ||||
Sbjct: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
Query: 73 ctggca 78
|||||
Sbjct: 69 ttggca 74
>25706_xtr-mir-18b:mirbase
Length = 78
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 13 taaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccctt 72
|||||||||| |||||||| |||||| |||| ||||| |||||||||||| ||| ||||
Sbjct: 9 taaggtgcatctagtgcagttagtgacatagtgtagcatctactgccctaaatgctcctt 68
Query: 73 ctggca 78
|||||
Sbjct: 69 ttggca 74
>27657_mml-mir-18b:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 13 taaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccctt 72
|||||||||| |||||||| ||||||| || ||| | |||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccctt 65
Query: 73 ctggca 78
||||||
Sbjct: 66 ctggca 71
>28366_hsa-mir-18b:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 13 taaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccctt 72
|||||||||| |||||||| ||||||| || ||| | |||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccctt 65
Query: 73 ctggca 78
||||||
Sbjct: 66 ctggca 71
>30758_ppy-mir-18b:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 13 taaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccctt 72
|||||||||| |||||||| ||||||| || ||| | |||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccctt 65
Query: 73 ctggca 78
||||||
Sbjct: 66 ctggca 71
>31432_oan-mir-18:mirbase
Length = 130
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 13 taaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccctt 72
|||||||||| |||||||| ||||||| ||| ||| | |||||||||||| ||| ||||
Sbjct: 29 taaggtgcatctagtgcagttagtgaagtagcttagaatctactgccctaaatgctcctt 88
Query: 73 ctggca 78
||||||
Sbjct: 89 ctggca 94
>33918_ssc-mir-18b:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 13 taaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccctt 72
|||||||||| |||||||| ||||||| || ||| | |||||||||||| ||||||||
Sbjct: 11 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccctt 70
Query: 73 ctggca 78
||||||
Sbjct: 71 ctggca 76
>25900_gga-mir-18b:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 7e-08
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 13 taaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccctt 72
|||||||||| |||||||| |||||| ||| ||| | |||||||||||| ||| ||||
Sbjct: 15 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 74
Query: 73 ctggca 78
||||||
Sbjct: 75 ctggca 80
>26629_cfa-mir-18b:mirbase
Length = 77
Score = 52.0 bits (26), Expect = 7e-08
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 13 taaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccctt 72
|||||||||| |||||||| ||||||| | ||| |||||||||||||| ||||||||
Sbjct: 8 taaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgcccctt 67
Query: 73 ctggca 78
| ||||
Sbjct: 68 ccggca 73
>25433_pma-mir-18a:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 4 tgcttatgctaaggtgcatttagtgcagatagt 36
||||| ||||||||||||| |||||||||||||
Sbjct: 9 tgcttgtgctaaggtgcatctagtgcagatagt 41
>30153_ptr-mir-18b:mirbase
Length = 70
Score = 50.1 bits (25), Expect = 3e-07
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 13 taaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccctt 72
|||||||||| |||||||| ||||||| || ||| | |||||||||||| |||||| |
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgccccat 65
Query: 73 ctggc 77
|||||
Sbjct: 66 ctggc 70
>25434_pma-mir-18b:mirbase
Length = 91
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 aaggtgcatttagtgcagatagtg 37
||||||||||||||||||||||||
Sbjct: 16 aaggtgcatttagtgcagatagtg 39
>26951_eca-mir-18b:mirbase
Length = 59
Score = 46.1 bits (23), Expect = 4e-06
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 13 taaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccct 71
|||||||||| |||||||| ||||||| || ||| | |||||||||||| |||||||
Sbjct: 1 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgcccct 59
>33135_bta-mir-18b:mirbase
Length = 75
Score = 44.1 bits (22), Expect = 2e-05
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 13 taaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccctt 72
|||||||||| |||||||| ||||||| || || | |||||||||||| ||| ||||
Sbjct: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
Query: 73 ctggca 78
||||||
Sbjct: 68 ctggca 73
>31781_mmu-mir-18b:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 ctactgccctaagtgccccttct 74
|||||||||||| ||||||||||
Sbjct: 50 ctactgccctaaatgccccttct 72
