miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25706_xtr-mir-18b:mirbase
Length = 78
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 11 taaggtgcatcttgtgtagttagtgaagtagtctagtatctactgcgctagatgttcctt 70
|||||||||||| ||| ||||||||| |||| ||| ||||||||| ||| ||| |||||
Sbjct: 9 taaggtgcatctagtgcagttagtgacatagtgtagcatctactgccctaaatgctcctt 68
Query: 71 ttggca 76
||||||
Sbjct: 69 ttggca 74
>31432_oan-mir-18:mirbase
Length = 130
Score = 60.0 bits (30), Expect = 3e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 11 taaggtgcatcttgtgtagttagtgaagtagtctagtatctactgcgctagatgttcctt 70
|||||||||||| ||| |||||||||||||| ||| ||||||||| ||| ||| |||||
Sbjct: 29 taaggtgcatctagtgcagttagtgaagtagcttagaatctactgccctaaatgctcctt 88
Query: 71 ttggca 76
|||||
Sbjct: 89 ctggca 94
>31780_mmu-mir-18a:mirbase
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||| ||| || ||||||||||| |||| |||||||||
Sbjct: 16 ctaaggtgcatctagtgcagatagtgaagtagactagcatctactgc 62
>32664_rno-mir-18a:mirbase
Length = 96
Score = 54.0 bits (27), Expect = 2e-08
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||| ||| || ||||||||||| |||| |||||||||
Sbjct: 16 ctaaggtgcatctagtgcagatagtgaagtagactagcatctactgc 62
>25656_xla-mir-18:mirbase
Length = 79
Score = 52.0 bits (26), Expect = 6e-08
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 11 taaggtgcatcttgtgtagttagtgaagtagtctagtatctactgcgctagatgttcctt 70
|||||||||||| ||| ||||||||| ||| ||| ||||||||| ||| ||| |||||
Sbjct: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
Query: 71 ttggca 76
||||||
Sbjct: 69 ttggca 74
>25900_gga-mir-18b:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 6e-08
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 11 taaggtgcatcttgtgtagttagtgaagtagtctagtatctactgcgctagatgttcctt 70
|||||||||||| ||| ||||||||| |||| ||| ||||||||| ||| ||| |||||
Sbjct: 15 taaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaatgctcctt 74
Query: 71 ttggca 76
|||||
Sbjct: 75 ctggca 80
>34211_dre-mir-18a:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 43/49 (87%)
Strand = Plus / Plus
Query: 8 tgctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||||| ||| || ||||||||||| |||| | |||||||
Sbjct: 8 tgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgc 56
>25705_xtr-mir-18a:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgc 59
>25899_gga-mir-18a:mirbase
Length = 93
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgc 59
>26404_tgu-mir-18a:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 10 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgc 56
>26628_cfa-mir-18a:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgc 59
>27337_mdo-mir-18:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 6 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgc 52
>27483_age-mir-18:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgc 51
>27544_lla-mir-18:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgc 51
>27592_sla-mir-18:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgc 51
>27656_mml-mir-18:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgc 51
>28175_mne-mir-18:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgc 51
>28263_ggo-mir-18:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgc 51
>28365_hsa-mir-18a:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgc 51
>30047_ppa-mir-18:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgc 51
>30152_ptr-mir-18a:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgc 51
>30757_ppy-mir-18:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgc 51
>31397_lca-mir-18:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgc 51
>33134_bta-mir-18a:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 5 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgc 51
>33917_ssc-mir-18a:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 10 ctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 13 ctaaggtgcatctagtgcagatagtgaagtagattagcatctactgc 59
>26950_eca-mir-18a:mirbase
Length = 61
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 11 taaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
|||||||||||| ||| || ||||||||||| ||| |||||||||
Sbjct: 1 taaggtgcatctagtgcagatagtgaagtagattagcatctactgc 46
>26951_eca-mir-18b:mirbase
Length = 59
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 11 taaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
|||||||||||| ||| ||||||||||| || ||| |||||||||
Sbjct: 1 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgc 46
>27657_mml-mir-18b:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 11 taaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
|||||||||||| ||| ||||||||||| || ||| |||||||||
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgc 51
>28366_hsa-mir-18b:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 11 taaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
|||||||||||| ||| ||||||||||| || ||| |||||||||
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgc 51
>30153_ptr-mir-18b:mirbase
Length = 70
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 11 taaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
|||||||||||| ||| ||||||||||| || ||| |||||||||
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgc 51
>30758_ppy-mir-18b:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 11 taaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
|||||||||||| ||| ||||||||||| || ||| |||||||||
Sbjct: 6 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgc 51
>33135_bta-mir-18b:mirbase
Length = 75
Score = 44.1 bits (22), Expect = 2e-05
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 11 taaggtgcatcttgtgtagttagtgaagtagtctagtatctactgcgctagatgttcctt 70
|||||||||||| ||| ||||||||||| || || ||||||||| ||| ||| |||||
Sbjct: 8 taaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaatgctcctt 67
Query: 71 ttggca 76
|||||
Sbjct: 68 ctggca 73
>33918_ssc-mir-18b:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 11 taaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
|||||||||||| ||| ||||||||||| || ||| |||||||||
Sbjct: 11 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgc 56
>34550_fru-mir-18:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 6e-05
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 8 tgctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||||| ||| || ||||||| ||| |||| | |||||||
Sbjct: 4 tgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgc 52
>34698_tni-mir-18:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 6e-05
Identities = 42/49 (85%)
Strand = Plus / Plus
Query: 8 tgctaaggtgcatcttgtgtagttagtgaagtagtctagtatctactgc 56
||||||||||||||| ||| || ||||||| ||| |||| | |||||||
Sbjct: 4 tgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgc 52
>26629_cfa-mir-18b:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 11 taaggtgcatcttgtgtagttagtgaag 38
|||||||||||| ||| |||||||||||
Sbjct: 8 taaggtgcatctagtgcagttagtgaag 35
>26405_tgu-mir-18b:mirbase
Length = 132
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 11 taaggtgcatcttgtgtagttagtgaagtag 41
|||||||||||| ||| ||||||||| ||||
Sbjct: 101 taaggtgcatctagtgcagttagtgatgtag 131
