miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25902_gga-mir-19b:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 26 agttttgcaggattgcatccggctttattacaacatgctgtgcaaatccatgcaaaact 84
||||||||||| |||||||| ||| ||| | | ||||||||||||||||||||||||
Sbjct: 16 agttttgcaggtttgcatccagctgtatgatactctgctgtgcaaatccatgcaaaact 74
>26407_tgu-mir-19b-1:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 26 agttttgcaggattgcatccggctttattacaacatgctgtgcaaatccatgcaaaact 84
||||||||||| |||||||| ||| ||| | | ||||||||||||||||||||||||
Sbjct: 3 agttttgcaggtttgcatccagctgtatgatactctgctgtgcaaatccatgcaaaact 61
>27339_mdo-mir-19b:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 26 agttttgcaggattgcatccggctttattacaacatgctgtgcaaatccatgcaaaact 84
||||||||||| |||||||| ||| ||| | | ||||||||||||||||||||||||
Sbjct: 17 agttttgcaggtttgcatccagctgtatgatattctgctgtgcaaatccatgcaaaact 75
>31783_mmu-mir-19b-1:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 26 agttttgcaggattgcatccggctttattacaacatgctgtgcaaatccatgcaaaact 84
||||||||||| |||||||| ||| ||| | | ||||||||||||||||||||||||
Sbjct: 16 agttttgcaggtttgcatccagctgtataatattctgctgtgcaaatccatgcaaaact 74
>32666_rno-mir-19b-1:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 26 agttttgcaggattgcatccggctttattacaacatgctgtgcaaatccatgcaaaact 84
||||||||||| |||||||| ||| ||| | | ||||||||||||||||||||||||
Sbjct: 16 agttttgcaggtttgcatccagctgtataatattctgctgtgcaaatccatgcaaaact 74
>25436_pma-mir-19b:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 50 tgctgtgcaaatccatgcaaaact 73
>25657_xla-mir-19b:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 41 tgctgtgcaaatccatgcaaaact 64
>25708_xtr-mir-19b-1:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 41 tgctgtgcaaatccatgcaaaact 64
>26408_tgu-mir-19b-2:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 38 tgctgtgcaaatccatgcaaaact 61
>26631_cfa-mir-19b-1:mirbase
Length = 59
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 35 tgctgtgcaaatccatgcaaaact 58
>26953_eca-mir-19b:mirbase
Length = 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 39 tgctgtgcaaatccatgcaaaact 62
>27485_age-mir-19b-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 51 tgctgtgcaaatccatgcaaaact 74
>27546_lla-mir-19b-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 51 tgctgtgcaaatccatgcaaaact 74
>27594_sla-mir-19b-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 51 tgctgtgcaaatccatgcaaaact 74
>27659_mml-mir-19b-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 51 tgctgtgcaaatccatgcaaaact 74
>28177_mne-mir-19b-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 51 tgctgtgcaaatccatgcaaaact 74
>28265_ggo-mir-19b-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 51 tgctgtgcaaatccatgcaaaact 74
>28368_hsa-mir-19b-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 51 tgctgtgcaaatccatgcaaaact 74
>30049_ppa-mir-19b-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 51 tgctgtgcaaatccatgcaaaact 74
>30155_ptr-mir-19b-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 51 tgctgtgcaaatccatgcaaaact 74
>30760_ppy-mir-19b-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 51 tgctgtgcaaatccatgcaaaact 74
>31399_lca-mir-19b-1:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 51 tgctgtgcaaatccatgcaaaact 74
>31434_oan-mir-19b:mirbase
Length = 103
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 56 tgctgtgcaaatccatgcaaaact 79
>33137_bta-mir-19b:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 51 tgctgtgcaaatccatgcaaaact 74
>33920_ssc-mir-19b-1:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 49 tgctgtgcaaatccatgcaaaact 72
>34552_fru-mir-19b:mirbase
Length = 63
Score = 48.1 bits (24), Expect = 1e-06
Identities = 51/59 (86%), Gaps = 2/59 (3%)
Strand = Plus / Plus
Query: 26 agttttgcaggattgcatccggctttattacaacatgctgtgcaaatccatgcaaaact 84
|||||||| || |||||||| ||||| |||| | |||||||||||||||||||||||
Sbjct: 4 agttttgctggtttgcatccagctttgttaccgc--gctgtgcaaatccatgcaaaact 60
>34700_tni-mir-19b:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 tgctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||||
Sbjct: 50 tgctgtgcaaatccatgcaaaact 73
>26632_cfa-mir-19b-2:mirbase
Length = 64
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 41 gctgtgcaaatccatgcaaaact 63
>26954_eca-mir-19b-2:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 60 gctgtgcaaatccatgcaaaact 82
>27486_age-mir-19b-2:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 60 gctgtgcaaatccatgcaaaact 82
>27547_lla-mir-19b-2:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 60 gctgtgcaaatccatgcaaaact 82
>27595_sla-mir-19b-2:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 60 gctgtgcaaatccatgcaaaact 82
>27660_mml-mir-19b-2:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 60 gctgtgcaaatccatgcaaaact 82
>28178_mne-mir-19b-2:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 60 gctgtgcaaatccatgcaaaact 82
>28266_ggo-mir-19b-2:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 60 gctgtgcaaatccatgcaaaact 82
>28369_hsa-mir-19b-2:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 60 gctgtgcaaatccatgcaaaact 82
>30050_ppa-mir-19b-2:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 60 gctgtgcaaatccatgcaaaact 82
>30156_ptr-mir-19b-2:mirbase
Length = 97
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 61 gctgtgcaaatccatgcaaaact 83
>30761_ppy-mir-19b-2:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 60 gctgtgcaaatccatgcaaaact 82
>31400_lca-mir-19b-2:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 54 gctgtgcaaatccatgcaaaact 76
>31784_mmu-mir-19b-2:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 52 gctgtgcaaatccatgcaaaact 74
>32667_rno-mir-19b-2:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 60 gctgtgcaaatccatgcaaaact 82
>33138_bta-mir-19b-2:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 54 gctgtgcaaatccatgcaaaact 76
>33921_ssc-mir-19b-2:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 49 gctgtgcaaatccatgcaaaact 71
>34215_dre-mir-19b:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 gctgtgcaaatccatgcaaaact 84
|||||||||||||||||||||||
Sbjct: 53 gctgtgcaaatccatgcaaaact 75
>25709_xtr-mir-19b-2:mirbase
Length = 79
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 ctgtgcaaatccatgcaaaact 84
||||||||||||||||||||||
Sbjct: 48 ctgtgcaaatccatgcaaaact 69
