miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25710_xtr-mir-20a:mirbase
Length = 84
Score = 83.8 bits (42), Expect = 3e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 47 gtgctaaagtgcttatagtgcaggtagtatttctgtcatctactgcagtgtgagcacttg 106
|||||||||||||||||||||||||||| ||||||| ||||||||| |||||||||
Sbjct: 10 gtgctaaagtgcttatagtgcaggtagtttttctgtattctactgcataatgagcactta 69
Query: 107 aagtacttctagct 120
||||||| ||||||
Sbjct: 70 aagtactcctagct 83
>27340_mdo-mir-20:mirbase
Length = 102
Score = 77.8 bits (39), Expect = 2e-15
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 50 ctaaagtgcttatagtgcaggtagtatttctgtcatctactgcagtgtgagcacttgaag 109
||||||||||||||||||||||||| ||| || |||||||||| | |||||||||||||
Sbjct: 23 ctaaagtgcttatagtgcaggtagtgttt-agttatctactgcattatgagcacttgaag 81
Query: 110 tacttctagct 120
|||| ||||||
Sbjct: 82 tactgctagct 92
>26633_cfa-mir-20a:mirbase
Length = 59
Score = 63.9 bits (32), Expect = 3e-11
Identities = 54/60 (90%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 51 taaagtgcttatagtgcaggtagtatttctgtcatctactgcagtgtgagcacttgaagt 110
|||||||||||||||||||||||| |||| || |||||||||| | ||||||||| ||||
Sbjct: 1 taaagtgcttatagtgcaggtagtgtttc-gttatctactgcattatgagcacttaaagt 59
>26955_eca-mir-20a:mirbase
Length = 71
Score = 63.9 bits (32), Expect = 3e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 50 ctaaagtgcttatagtgcaggtagtatttctgtcatctactgcagtgtgagcacttgaag 109
||||||||||||||||||||||||| ||| || |||||||||| | ||||||||| |||
Sbjct: 7 ctaaagtgcttatagtgcaggtagtgttt-agttatctactgcattatgagcacttaaag 65
Query: 110 tact 113
||||
Sbjct: 66 tact 69
>27487_age-mir-20:mirbase
Length = 71
Score = 63.9 bits (32), Expect = 3e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 50 ctaaagtgcttatagtgcaggtagtatttctgtcatctactgcagtgtgagcacttgaag 109
||||||||||||||||||||||||| ||| || |||||||||| | ||||||||| |||
Sbjct: 7 ctaaagtgcttatagtgcaggtagtgttt-agttatctactgcattatgagcacttaaag 65
Query: 110 tact 113
||||
Sbjct: 66 tact 69
>27548_lla-mir-20:mirbase
Length = 71
Score = 63.9 bits (32), Expect = 3e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 50 ctaaagtgcttatagtgcaggtagtatttctgtcatctactgcagtgtgagcacttgaag 109
||||||||||||||||||||||||| ||| || |||||||||| | ||||||||| |||
Sbjct: 7 ctaaagtgcttatagtgcaggtagtgttt-agttatctactgcattatgagcacttaaag 65
Query: 110 tact 113
||||
Sbjct: 66 tact 69
>27596_sla-mir-20:mirbase
Length = 71
Score = 63.9 bits (32), Expect = 3e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 50 ctaaagtgcttatagtgcaggtagtatttctgtcatctactgcagtgtgagcacttgaag 109
||||||||||||||||||||||||| ||| || |||||||||| | ||||||||| |||
Sbjct: 7 ctaaagtgcttatagtgcaggtagtgttt-agttatctactgcattatgagcacttaaag 65
Query: 110 tact 113
||||
Sbjct: 66 tact 69
>27661_mml-mir-20a:mirbase
Length = 71
Score = 63.9 bits (32), Expect = 3e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 50 ctaaagtgcttatagtgcaggtagtatttctgtcatctactgcagtgtgagcacttgaag 109
||||||||||||||||||||||||| ||| || |||||||||| | ||||||||| |||
Sbjct: 7 ctaaagtgcttatagtgcaggtagtgttt-agttatctactgcattatgagcacttaaag 65
Query: 110 tact 113
||||
Sbjct: 66 tact 69
>28179_mne-mir-20:mirbase
Length = 71
Score = 63.9 bits (32), Expect = 3e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 50 ctaaagtgcttatagtgcaggtagtatttctgtcatctactgcagtgtgagcacttgaag 109
||||||||||||||||||||||||| ||| || |||||||||| | ||||||||| |||
Sbjct: 7 ctaaagtgcttatagtgcaggtagtgttt-agttatctactgcattatgagcacttaaag 65
Query: 110 tact 113
||||
Sbjct: 66 tact 69
>28267_ggo-mir-20:mirbase
Length = 71
Score = 63.9 bits (32), Expect = 3e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 50 ctaaagtgcttatagtgcaggtagtatttctgtcatctactgcagtgtgagcacttgaag 109
||||||||||||||||||||||||| ||| || |||||||||| | ||||||||| |||
Sbjct: 7 ctaaagtgcttatagtgcaggtagtgttt-agttatctactgcattatgagcacttaaag 65
Query: 110 tact 113
||||
Sbjct: 66 tact 69
>28370_hsa-mir-20a:mirbase
Length = 71
Score = 63.9 bits (32), Expect = 3e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 50 ctaaagtgcttatagtgcaggtagtatttctgtcatctactgcagtgtgagcacttgaag 109
||||||||||||||||||||||||| ||| || |||||||||| | ||||||||| |||
Sbjct: 7 ctaaagtgcttatagtgcaggtagtgttt-agttatctactgcattatgagcacttaaag 65
Query: 110 tact 113
||||
Sbjct: 66 tact 69
>30051_ppa-mir-20:mirbase
Length = 71
Score = 63.9 bits (32), Expect = 3e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 50 ctaaagtgcttatagtgcaggtagtatttctgtcatctactgcagtgtgagcacttgaag 109
||||||||||||||||||||||||| ||| || |||||||||| | ||||||||| |||
Sbjct: 7 ctaaagtgcttatagtgcaggtagtgttt-agttatctactgcattatgagcacttaaag 65
Query: 110 tact 113
||||
Sbjct: 66 tact 69
>30157_ptr-mir-20a:mirbase
Length = 71
Score = 63.9 bits (32), Expect = 3e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 50 ctaaagtgcttatagtgcaggtagtatttctgtcatctactgcagtgtgagcacttgaag 109
||||||||||||||||||||||||| ||| || |||||||||| | ||||||||| |||
Sbjct: 7 ctaaagtgcttatagtgcaggtagtgttt-agttatctactgcattatgagcacttaaag 65
Query: 110 tact 113
||||
Sbjct: 66 tact 69
>30762_ppy-mir-20:mirbase
Length = 71
Score = 63.9 bits (32), Expect = 3e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 50 ctaaagtgcttatagtgcaggtagtatttctgtcatctactgcagtgtgagcacttgaag 109
||||||||||||||||||||||||| ||| || |||||||||| | ||||||||| |||
Sbjct: 7 ctaaagtgcttatagtgcaggtagtgttt-agttatctactgcattatgagcacttaaag 65
Query: 110 tact 113
||||
Sbjct: 66 tact 69
>33139_bta-mir-20a:mirbase
Length = 71
Score = 63.9 bits (32), Expect = 3e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 50 ctaaagtgcttatagtgcaggtagtatttctgtcatctactgcagtgtgagcacttgaag 109
||||||||||||||||||||||||| ||| || |||||||||| | ||||||||| |||
Sbjct: 7 ctaaagtgcttatagtgcaggtagtgttt-agttatctactgcattatgagcacttaaag 65
Query: 110 tact 113
||||
Sbjct: 66 tact 69
>33922_ssc-mir-20:mirbase
Length = 71
Score = 63.9 bits (32), Expect = 3e-11
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 50 ctaaagtgcttatagtgcaggtagtatttctgtcatctactgcagtgtgagcacttgaag 109
||||||||||||||||||||||||| ||| || |||||||||| | ||||||||| |||
Sbjct: 7 ctaaagtgcttatagtgcaggtagtgttt-agttatctactgcattatgagcacttaaag 65
Query: 110 tact 113
||||
Sbjct: 66 tact 69
>34553_fru-mir-20:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 5e-10
Identities = 61/69 (88%), Gaps = 3/69 (4%)
Strand = Plus / Plus
Query: 51 taaagtgcttatagtgcaggtagtatttctg-tcatctactgcagtgtgagcacttgaag 109
|||||||||||||||||||||||| | ||| | ||||||||||||||||||||| ||
Sbjct: 9 taaagtgcttatagtgcaggtagt--tactgatggtctactgcagtgtgagcacttctag 66
Query: 110 tacttctag 118
|||||||||
Sbjct: 67 tacttctag 75
>31436_oan-mir-20a-2:mirbase
Length = 109
Score = 58.0 bits (29), Expect = 2e-09
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 50 ctaaagtgcttatagtgcaggtagtatttctgtcatctactgcagtgtgagcacttgaag 109
||||||||||||||||||||||||| ||| || |||||||||| | ||||||||| |||
Sbjct: 22 ctaaagtgcttatagtgcaggtagtgttt-agttatctactgcattatgagcacttaaag 80
Query: 110 t 110
|
Sbjct: 81 t 81
>31786_mmu-mir-20b:mirbase
Length = 80
Score = 58.0 bits (29), Expect = 2e-09
Identities = 54/61 (88%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 46 agtgctaaagtgcttatagtgcaggtagtatttctgtca-tctactgcagtgtgagcact 104
||||| |||||||| |||||||||||||| ||| | || ||||||||||||||||||||
Sbjct: 7 agtgccaaagtgctcatagtgcaggtagtttttataccactctactgcagtgtgagcact 66
Query: 105 t 105
|
Sbjct: 67 t 67
>31401_lca-mir-20:mirbase
Length = 71
Score = 56.0 bits (28), Expect = 8e-09
Identities = 56/64 (87%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 50 ctaaagtgcttatagtgcaggtagtatttctgtcatctactgcagtgtgagcacttgaag 109
||||||||||||||||||||||||| ||| || |||||||||| ||||||||| |||
Sbjct: 7 ctaaagtgcttatagtgcaggtagtgttt-agttatctactgcatcatgagcacttaaag 65
Query: 110 tact 113
||||
Sbjct: 66 tact 69
>32668_rno-mir-20a:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 8e-09
Identities = 41/44 (93%), Gaps = 1/44 (2%)
Strand = Plus / Plus
Query: 50 ctaaagtgcttatagtgcaggtagtatttctgtcatctactgca 93
||||||||||||||||||||||||| | || |||||||||||||
Sbjct: 15 ctaaagtgcttatagtgcaggtagtgtgtc-gtcatctactgca 57
>25903_gga-mir-20a:mirbase
Length = 98
Score = 54.0 bits (27), Expect = 3e-08
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 50 ctaaagtgcttatagtgcaggtagtatttctgtcatctactgcagtgtgagcacttgaag 109
||||||||||||||||||||||||| ||| | |||||||||| | | ||||||| |||
Sbjct: 18 ctaaagtgcttatagtgcaggtagt-gttcactaatctactgcattataagcacttaaag 76
Query: 110 tacttctagct 120
|||| ||||||
Sbjct: 77 tactgctagct 87
>26409_tgu-mir-20a:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 ctaaagtgcttatagtgcaggtagt 74
|||||||||||||||||||||||||
Sbjct: 10 ctaaagtgcttatagtgcaggtagt 34
>31785_mmu-mir-20a:mirbase
Length = 107
Score = 50.1 bits (25), Expect = 5e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 50 ctaaagtgcttatagtgcaggtagt 74
|||||||||||||||||||||||||
Sbjct: 26 ctaaagtgcttatagtgcaggtagt 50
>32669_rno-mir-20b:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 5e-07
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 46 agtgctaaagtgcttatagtgcaggtagtattt-ctgtcatctactgcagtgtgagcact 104
||||| |||||||| ||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct: 3 agtgccaaagtgctcatagtgcaggtaggttttgctgcactctactgcagtgtgagcact 62
Query: 105 t 105
|
Sbjct: 63 t 63
>32670_rno-mir-20b:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 5e-07
Identities = 53/61 (86%), Gaps = 1/61 (1%)
Strand = Plus / Plus
Query: 46 agtgctaaagtgcttatagtgcaggtagtattt-ctgtcatctactgcagtgtgagcact 104
||||| |||||||| ||||||||||||| ||| ||| ||||||||||||||||||||
Sbjct: 3 agtgccaaagtgctcatagtgcaggtaggttttgctgcactctactgcagtgtgagcact 62
Query: 105 t 105
|
Sbjct: 63 t 63
>25438_pma-mir-20a:mirbase
Length = 91
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 47 gtgctaaagtgcttatagtgcaggtagt 74
|||| |||||||||||||||||||||||
Sbjct: 12 gtgccaaagtgcttatagtgcaggtagt 39
>34701_tni-mir-20:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 51 taaagtgcttatagtgcaggtagt 74
||||||||||||||||||||||||
Sbjct: 8 taaagtgcttatagtgcaggtagt 31
>25760_xtr-mir-106:mirbase
Length = 63
Score = 46.1 bits (23), Expect = 8e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 52 aaagtgcttatagtgcaggtagtattt 78
|||||||||||||||||||||| ||||
Sbjct: 5 aaagtgcttatagtgcaggtagaattt 31
>27369_mdo-mir-106:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 aaagtgcttatagtgcaggtag 73
||||||||||||||||||||||
Sbjct: 8 aaagtgcttatagtgcaggtag 29
>34209_dre-mir-17a-1:mirbase
Length = 138
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 52 aaagtgcttatagtgcaggtagtatt 77
|||||||||| |||||||||||||||
Sbjct: 42 aaagtgcttacagtgcaggtagtatt 67
>31435_oan-mir-20a-1:mirbase
Length = 136
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 ctaaagtgcttatagtgcagg 70
|||||||||||||||||||||
Sbjct: 30 ctaaagtgcttatagtgcagg 50
>34549_fru-mir-17-2:mirbase
Length = 82
Score = 42.1 bits (21), Expect = 1e-04
Identities = 40/45 (88%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 52 aaagtgcttatagtgcaggtagtatttctgtcatctactgcagtg 96
|||||||||| |||||||||||| || || ||||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtagt-ttgatgacatctactgcagtg 58
>31779_mmu-mir-17:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 5e-04
Identities = 49/56 (87%), Gaps = 2/56 (3%)
Strand = Plus / Plus
Query: 52 aaagtgcttatagtgcaggtagt-atttctgtcatctactgcagtgtgagcacttg 106
|||||||||| |||||||||||| || | || |||||||||||||| | |||||||
Sbjct: 15 aaagtgcttacagtgcaggtagtgatgtgtg-catctactgcagtgagggcacttg 69
>34696_tni-mir-17-1:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 52 aaagtgcttatagtgcaggtagta 75
|||||||||| |||||||||||||
Sbjct: 15 aaagtgcttacagtgcaggtagta 38
