miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34554_fru-mir-21:mirbase
Length = 73
Score = 89.7 bits (45), Expect = 5e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 42 tgtcagatagcttatcagactggtgttggctgttacattcgcccggcgacaacagtctgt 101
||||| ||||||||||||||||||||||||||||| | || ||||||||||||||||
Sbjct: 1 tgtcaaatagcttatcagactggtgttggctgttaagattgcaaggcgacaacagtctgt 60
Query: 102 aggctgtctgaca 114
|||||||||||||
Sbjct: 61 aggctgtctgaca 73
>34702_tni-mir-21:mirbase
Length = 122
Score = 89.7 bits (45), Expect = 5e-19
Identities = 72/81 (88%)
Strand = Plus / Plus
Query: 42 tgtcagatagcttatcagactggtgttggctgttacattcgcccggcgacaacagtctgt 101
||||| ||||||||||||||||||||||||||||| | || |||||||||||||||
Sbjct: 32 tgtcaaatagcttatcagactggtgttggctgttaagattgcaaggcgacaacagtctga 91
Query: 102 aggctgtctgacattttgggc 122
|||||||||||||||| ||||
Sbjct: 92 aggctgtctgacatttcgggc 112
>25905_gga-mir-21:mirbase
Length = 97
Score = 61.9 bits (31), Expect = 1e-10
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 42 tgtcagatagcttatcagactggtgttggctgttacattcgcccggcgacaacagtctgt 101
|||| ||||||||||||||||| ||||| ||||| || | | ||| ||||||||| ||
Sbjct: 11 tgtcggatagcttatcagactgatgttgactgttggat-ctcatggcaacaacagtcggt 69
Query: 102 aggctgtctgacattttgg 120
|||||||||||||||||||
Sbjct: 70 aggctgtctgacattttgg 88
>31438_oan-mir-21:mirbase
Length = 114
Score = 52.0 bits (26), Expect = 1e-07
Identities = 63/74 (85%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 47 gatagcttatcagactggtgttggctgttacattcgcccggcgacaacagtctgtaggct 106
||||||||||||||||| ||||| |||||| | || || ||| ||| ||||| | ||||
Sbjct: 27 gatagcttatcagactgatgttgactgttaga-tctcctggcaacagcagtcgatgggct 85
Query: 107 gtctgacattttgg 120
||||||||||||||
Sbjct: 86 gtctgacattttgg 99
>34221_dre-mir-21-2:mirbase
Length = 127
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 49 tagcttatcagactggtgttggct 72
||||||||||||||||||||||||
Sbjct: 34 tagcttatcagactggtgttggct 57
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 101 taggctgtctgacattttgggc 122
||||||||||||||||||||||
Sbjct: 84 taggctgtctgacattttgggc 105
>26411_tgu-mir-21:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 tgtcagatagcttatcagactggtgttggctgtt 75
|||| ||||||||||||||||| ||||| |||||
Sbjct: 4 tgtcggatagcttatcagactgatgttgactgtt 37
>27341_mdo-mir-21:mirbase
Length = 74
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 tgtcagatagcttatcagactggtgttggctgtt 75
|||| ||||||||||||||||| ||||| |||||
Sbjct: 1 tgtcggatagcttatcagactgatgttgactgtt 34
>31787_mmu-mir-21:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 3e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 42 tgtcagatagcttatcagactggtgttggctgtt 75
|||| ||||||||||||||||| ||||| |||||
Sbjct: 11 tgtcggatagcttatcagactgatgttgactgtt 44
