miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34704_tni-mir-22b:mirbase
Length = 87
Score = 73.8 bits (37), Expect = 2e-14
Identities = 70/81 (86%), Gaps = 5/81 (6%)
Strand = Plus / Plus
Query: 7 tcacagtcgttcttcactggctagctttatgt-----ggcagcaccttaaagctgccagt 61
|||||||||||||||||||||||||||||||| | | ||| |||||||||||||
Sbjct: 7 tcacagtcgttcttcactggctagctttatgtcctccgaccccacgctaaagctgccagt 66
Query: 62 tgaagagctgttgtgggtaac 82
||||||||||||||| |||||
Sbjct: 67 tgaagagctgttgtgtgtaac 87
>34556_fru-mir-22b:mirbase
Length = 86
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 7 tcacagtcgttcttcactggctagctttatgt 38
||||||||||||||||||||||||||||||||
Sbjct: 7 tcacagtcgttcttcactggctagctttatgt 38
>25441_pma-mir-22b:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctg 71
|||||||||||||||||||||||
Sbjct: 51 taaagctgccagttgaagagctg 73
>25440_pma-mir-22a:mirbase
Length = 96
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagct 70
||||||||||||||||||||||
Sbjct: 58 taaagctgccagttgaagagct 79
>25712_xtr-mir-22:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 55 taaagctgccagttgaagaactgttg 80
>25906_gga-mir-22:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 60 taaagctgccagttgaagaactgttg 85
>26958_eca-mir-22:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 51 taaagctgccagttgaagaactgttg 76
>27489_age-mir-22:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 51 taaagctgccagttgaagaactgttg 76
>27549_lla-mir-22:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 51 taaagctgccagttgaagaactgttg 76
>27597_sla-mir-22:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 51 taaagctgccagttgaagaactgttg 76
>27664_mml-mir-22:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 51 taaagctgccagttgaagaactgttg 76
>28181_mne-mir-22:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 51 taaagctgccagttgaagaactgttg 76
>28373_hsa-mir-22:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 51 taaagctgccagttgaagaactgttg 76
>30053_ppa-mir-22:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 51 taaagctgccagttgaagaactgttg 76
>30160_ptr-mir-22:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 51 taaagctgccagttgaagaactgttg 76
>30765_ppy-mir-22:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 51 taaagctgccagttgaagaactgttg 76
>31402_lca-mir-22:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 51 taaagctgccagttgaagaactgttg 76
>31439_oan-mir-22:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 72 taaagctgccagttgaagaactgttg 97
>31788_mmu-mir-22:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 55 taaagctgccagttgaagaactgttg 80
>32672_rno-mir-22:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 55 taaagctgccagttgaagaactgttg 80
>33142_bta-mir-22:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 51 taaagctgccagttgaagaactgttg 76
>33143_bta-mir-22:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 51 taaagctgccagttgaagaactgttg 76
>33790_bta-mir-3600:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 33 taaagctgccagttgaagaactgttg 8
>33924_ssc-mir-22:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 47 taaagctgccagttgaagaactgttg 72
>33925_ssc-mir-22:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttg 74
||||||||||||||||||| ||||||
Sbjct: 47 taaagctgccagttgaagaactgttg 72
>34222_dre-mir-22a:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttgtgg 77
|||||||||||| |||||| |||||||||
Sbjct: 53 taaagctgccagctgaagaactgttgtgg 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 gttcttcactggctagctttatgt 38
||||||||||||| ||||||||||
Sbjct: 15 gttcttcactggcaagctttatgt 38
>34555_fru-mir-22a:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttgtgg 77
|||||||||||| |||||| |||||||||
Sbjct: 53 taaagctgccagctgaagaactgttgtgg 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 gttcttcactggctagctttatgt 38
||||||||||||| ||||||||||
Sbjct: 15 gttcttcactggcaagctttatgt 38
>34703_tni-mir-22a:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgttgtgg 77
|||||||||||| |||||| |||||||||
Sbjct: 53 taaagctgccagctgaagaactgttgtgg 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 15 gttcttcactggctagctttatgt 38
||||||||||||| ||||||||||
Sbjct: 15 gttcttcactggcaagctttatgt 38
>26636_cfa-mir-22:mirbase
Length = 60
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaagagctgt 72
||||||||||||||||||| ||||
Sbjct: 37 taaagctgccagttgaagaactgt 60
>24653_bfl-mir-22:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 aaagctgccagttgaagagctgt 72
||||||||||| |||||||||||
Sbjct: 51 aaagctgccagatgaagagctgt 73
>27342_mdo-mir-22:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 taaagctgccagttgaaga 67
|||||||||||||||||||
Sbjct: 49 taaagctgccagttgaaga 67
