miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34557_fru-mir-23a-1:mirbase
Length = 88
Score = 99.6 bits (50), Expect = 3e-22
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 1 gctgtggcggggagggttcctggcaccgtgatttggtggataaacagaaatgaaaatcac 60
||||||||||||||||||||||||||||||||||| || | ||| | ||| ||||||||
Sbjct: 1 gctgtggcggggagggttcctggcaccgtgatttgatgcacaaagacaaacaaaaatcac 60
Query: 61 attgccagggatttccac 78
||||||||||||||||||
Sbjct: 61 attgccagggatttccac 78
>34705_tni-mir-23a-1:mirbase
Length = 88
Score = 99.6 bits (50), Expect = 3e-22
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 1 gctgtggcggggagggttcctggcaccgtgatttggtggataaacagaaatgaaaatcac 60
||||||||||||||||||||||||||||||||||| || | ||| | ||| ||||||||
Sbjct: 1 gctgtggcggggagggttcctggcaccgtgatttgatgcacaaagacaaacaaaaatcac 60
Query: 61 attgccagggatttccac 78
||||||||||||||||||
Sbjct: 61 attgccagggatttccac 78
>25714_xtr-mir-23a-2:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttcca 77
|||||||||||||||||||||||||
Sbjct: 49 aaaatcacattgccagggatttcca 73
>27344_mdo-mir-23b:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 50 atgaaaatcacattgccagggatttccac 78
|||||||||||||||||||||||| ||||
Sbjct: 40 atgaaaatcacattgccagggattaccac 68
>31440_oan-mir-23a:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttcca 77
|||||||||||||||||||||||||
Sbjct: 50 aaaatcacattgccagggatttcca 74
>34226_dre-mir-23a-3:mirbase
Length = 78
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttcca 77
|||||||||||||||||||||||||
Sbjct: 45 aaaatcacattgccagggatttcca 69
>34558_fru-mir-23a-2:mirbase
Length = 77
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 49 aatgaaaatcacattgccagggatttcca 77
|||| ||||||||||||||||||||||||
Sbjct: 41 aatgtaaatcacattgccagggatttcca 69
>34706_tni-mir-23a-2:mirbase
Length = 76
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 49 aatgaaaatcacattgccagggatttcca 77
|||| ||||||||||||||||||||||||
Sbjct: 41 aatgtaaatcacattgccagggatttcca 69
>25659_xla-mir-23a:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggatttcca 77
||||||||||||||||||||||||
Sbjct: 49 aaatcacattgccagggatttcca 72
>25713_xtr-mir-23a-1:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggatttcca 77
||||||||||||||||||||||||
Sbjct: 49 aaatcacattgccagggatttcca 72
>26959_eca-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggatttcca 77
||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttcca 66
>27343_mdo-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggatttcca 77
||||||||||||||||||||||||
Sbjct: 40 aaatcacattgccagggatttcca 63
>27490_age-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggatttcca 77
||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttcca 66
>27598_sla-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggatttcca 77
||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttcca 66
>27665_mml-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggatttcca 77
||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttcca 66
>28182_mne-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggatttcca 77
||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttcca 66
>28269_ggo-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggatttcca 77
||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttcca 66
>28374_hsa-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggatttcca 77
||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttcca 66
>30054_ppa-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggatttcca 77
||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttcca 66
>30161_ptr-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggatttcca 77
||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttcca 66
>30766_ppy-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggatttcca 77
||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttcca 66
>31403_lca-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggatttcca 77
||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttcca 66
>31789_mmu-mir-23a:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggatttcca 77
||||||||||||||||||||||||
Sbjct: 44 aaatcacattgccagggatttcca 67
>32673_rno-mir-23a:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggatttcca 77
||||||||||||||||||||||||
Sbjct: 44 aaatcacattgccagggatttcca 67
>33144_bta-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggatttcca 77
||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttcca 66
>33926_ssc-mir-23a:mirbase
Length = 70
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggatttcca 77
||||||||||||||||||||||||
Sbjct: 40 aaatcacattgccagggatttcca 63
>25443_pma-mir-23b:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccact 79
||||||||||||||||||||| |||||
Sbjct: 51 aaaatcacattgccagggattaccact 77
>34225_dre-mir-23a-2:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 aatcacattgccagggatttcca 77
|||||||||||||||||||||||
Sbjct: 56 aatcacattgccagggatttcca 78
>34559_fru-mir-23a-3:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 aatcacattgccagggatttcca 77
|||||||||||||||||||||||
Sbjct: 52 aatcacattgccagggatttcca 74
>34707_tni-mir-23a-3:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 aatcacattgccagggatttcca 77
|||||||||||||||||||||||
Sbjct: 53 aatcacattgccagggatttcca 75
>25715_xtr-mir-23b:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccac 78
||||||||||||||||||||| ||||
Sbjct: 50 aaaatcacattgccagggattaccac 75
>25907_gga-mir-23b:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccac 78
||||||||||||||||||||| ||||
Sbjct: 49 aaaatcacattgccagggattaccac 74
>26412_tgu-mir-23:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccac 78
||||||||||||||||||||| ||||
Sbjct: 38 aaaatcacattgccagggattaccac 63
>26960_eca-mir-23b:mirbase
Length = 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccac 78
||||||||||||||||||||| ||||
Sbjct: 43 aaaatcacattgccagggattaccac 68
>27666_mml-mir-23b:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccac 78
||||||||||||||||||||| ||||
Sbjct: 55 aaaatcacattgccagggattaccac 80
>28375_hsa-mir-23b:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccac 78
||||||||||||||||||||| ||||
Sbjct: 55 aaaatcacattgccagggattaccac 80
>30055_ppa-mir-23b:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccac 78
||||||||||||||||||||| ||||
Sbjct: 55 aaaatcacattgccagggattaccac 80
>30162_ptr-mir-23b:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccac 78
||||||||||||||||||||| ||||
Sbjct: 55 aaaatcacattgccagggattaccac 80
>30767_ppy-mir-23b:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccac 78
||||||||||||||||||||| ||||
Sbjct: 55 aaaatcacattgccagggattaccac 80
>31790_mmu-mir-23b:mirbase
Length = 74
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccac 78
||||||||||||||||||||| ||||
Sbjct: 43 aaaatcacattgccagggattaccac 68
>32674_rno-mir-23b:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccac 78
||||||||||||||||||||| ||||
Sbjct: 55 aaaatcacattgccagggattaccac 80
>33145_bta-mir-23b:mirbase
Length = 60
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccac 78
||||||||||||||||||||| ||||
Sbjct: 35 aaaatcacattgccagggattaccac 60
>33146_bta-mir-23b:mirbase
Length = 60
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccac 78
||||||||||||||||||||| ||||
Sbjct: 35 aaaatcacattgccagggattaccac 60
>33927_ssc-mir-23b:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccac 78
||||||||||||||||||||| ||||
Sbjct: 47 aaaatcacattgccagggattaccac 72
>34227_dre-mir-23b:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccac 78
||||||||||||||||||||| ||||
Sbjct: 48 aaaatcacattgccagggattaccac 73
>34560_fru-mir-23b:mirbase
Length = 73
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccac 78
||||||||||||||||||||| ||||
Sbjct: 42 aaaatcacattgccagggattaccac 67
>34708_tni-mir-23b:mirbase
Length = 73
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatttccac 78
||||||||||||||||||||| ||||
Sbjct: 42 aaaatcacattgccagggattaccac 67
>25442_pma-mir-23a:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatt 73
|||||||||||||||||||||
Sbjct: 47 aaaatcacattgccagggatt 67
>26637_cfa-mir-23a:mirbase
Length = 52
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 aaatcacattgccagggattt 74
|||||||||||||||||||||
Sbjct: 32 aaatcacattgccagggattt 52
>26638_cfa-mir-23b:mirbase
Length = 54
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggatt 73
|||||||||||||||||||||
Sbjct: 33 aaaatcacattgccagggatt 53
>31441_oan-mir-23b:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 aaaatcacattgccagggat 72
||||||||||||||||||||
Sbjct: 60 aaaatcacattgccagggat 79
