miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34707_tni-mir-23a-3:mirbase
Length = 81
Score = 101 bits (51), Expect = 9e-23
Identities = 70/75 (93%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 11 ggccaggggaattcctggcagagtgatttttaaaccta-atgactgaatcacattgccag 69
||||||||||||||||||||||||||||||| | ||| | |||||||||||||||||||
Sbjct: 7 ggccaggggaattcctggcagagtgatttttgagactacaggactgaatcacattgccag 66
Query: 70 ggatttccaatggct 84
|||||||||||||||
Sbjct: 67 ggatttccaatggct 81
>34559_fru-mir-23a-3:mirbase
Length = 80
Score = 99.6 bits (50), Expect = 4e-22
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 11 ggccaggggaattcctggcagagtgatttttaaacctaatgactgaatcacattgccagg 70
||||||||| |||||||||||||||||||||| || | ||||||||||||||||||||
Sbjct: 7 ggccagggggattcctggcagagtgatttttagactacaggactgaatcacattgccagg 66
Query: 71 gatttccaatggct 84
||||||||||||||
Sbjct: 67 gatttccaatggct 80
>25714_xtr-mir-23a-2:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaat 80
|||||||||||||||||||||||||
Sbjct: 51 aatcacattgccagggatttccaat 75
>33926_ssc-mir-23a:mirbase
Length = 70
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaat 80
|||||||||||||||||||||||||
Sbjct: 41 aatcacattgccagggatttccaat 65
>25659_xla-mir-23a:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 50 aatcacattgccagggatttccaa 73
>25713_xtr-mir-23a-1:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 50 aatcacattgccagggatttccaa 73
>26959_eca-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>27343_mdo-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 41 aatcacattgccagggatttccaa 64
>27490_age-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>27598_sla-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>27665_mml-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>28182_mne-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>28269_ggo-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>28374_hsa-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>30054_ppa-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>30161_ptr-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>30766_ppy-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>31403_lca-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>31440_oan-mir-23a:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 52 aatcacattgccagggatttccaa 75
>31789_mmu-mir-23a:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 45 aatcacattgccagggatttccaa 68
>32673_rno-mir-23a:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 45 aatcacattgccagggatttccaa 68
>33144_bta-mir-23a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 44 aatcacattgccagggatttccaa 67
>34226_dre-mir-23a-3:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 47 aatcacattgccagggatttccaa 70
>34558_fru-mir-23a-2:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 47 aatcacattgccagggatttccaa 70
>34706_tni-mir-23a-2:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaa 79
||||||||||||||||||||||||
Sbjct: 47 aatcacattgccagggatttccaa 70
>34224_dre-mir-23a-1:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttcca 78
|||||||||||||||||||||||
Sbjct: 55 aatcacattgccagggatttcca 77
>34557_fru-mir-23a-1:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttcca 78
|||||||||||||||||||||||
Sbjct: 55 aatcacattgccagggatttcca 77
>34705_tni-mir-23a-1:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttcca 78
|||||||||||||||||||||||
Sbjct: 55 aatcacattgccagggatttcca 77
>25443_pma-mir-23b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggatttccaatggc 83
||||||||||||||||||| ||| ||||
Sbjct: 53 aatcacattgccagggattaccactggc 80
>26637_cfa-mir-23a:mirbase
Length = 52
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 56 aatcacattgccagggattt 75
||||||||||||||||||||
Sbjct: 33 aatcacattgccagggattt 52
