miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34558_fru-mir-23a-2:mirbase
Length = 77
Score = 73.8 bits (37), Expect = 2e-14
Identities = 69/77 (89%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 3 agctggagggattcctggcagagtgatttgggatt-atatcata-aaatcacattgccag 60
||||||||||||||||||||||||||||||| | || | || |||||||||||||||
Sbjct: 1 agctggagggattcctggcagagtgatttggctgtgatgtaatgtaaatcacattgccag 60
Query: 61 ggatttccaaccagctg 77
|||||||||||||||||
Sbjct: 61 ggatttccaaccagctg 77
>34706_tni-mir-23a-2:mirbase
Length = 76
Score = 71.9 bits (36), Expect = 6e-14
Identities = 68/76 (89%), Gaps = 2/76 (2%)
Strand = Plus / Plus
Query: 3 agctggagggattcctggcagagtgatttgg-gattatatcat-aaaatcacattgccag 60
||||||||||||||||||||||||||||||| | || | || |||||||||||||||
Sbjct: 1 agctggagggattcctggcagagtgatttggctgtgatgtaatgtaaatcacattgccag 60
Query: 61 ggatttccaaccagct 76
||||||||||||||||
Sbjct: 61 ggatttccaaccagct 76
>25714_xtr-mir-23a-2:mirbase
Length = 83
Score = 61.9 bits (31), Expect = 6e-11
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 11 ggattcctggcagagtgatttgggattatatcata--aaatcacattgccagggatttcc 68
||||||||||||||||||||||| | | ||| || |||||||||||||||||||||||
Sbjct: 13 ggattcctggcagagtgatttggaaatgtatggtacaaaatcacattgccagggatttcc 72
Query: 69 aa 70
||
Sbjct: 73 aa 74
>26959_eca-mir-23a:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaacc 72
|||||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttccaacc 69
>27490_age-mir-23a:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaacc 72
|||||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttccaacc 69
>27598_sla-mir-23a:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaacc 72
|||||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttccaacc 69
>27665_mml-mir-23a:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaacc 72
|||||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttccaacc 69
>28182_mne-mir-23a:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaacc 72
|||||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttccaacc 69
>28269_ggo-mir-23a:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaacc 72
|||||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttccaacc 69
>28374_hsa-mir-23a:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaacc 72
|||||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttccaacc 69
>30054_ppa-mir-23a:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaacc 72
|||||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttccaacc 69
>30161_ptr-mir-23a:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaacc 72
|||||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttccaacc 69
>30766_ppy-mir-23a:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaacc 72
|||||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttccaacc 69
>31403_lca-mir-23a:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaacc 72
|||||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttccaacc 69
>31440_oan-mir-23a:mirbase
Length = 84
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 45 aaaatcacattgccagggatttccaac 71
|||||||||||||||||||||||||||
Sbjct: 50 aaaatcacattgccagggatttccaac 76
>33144_bta-mir-23a:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaacc 72
|||||||||||||||||||||||||||
Sbjct: 43 aaatcacattgccagggatttccaacc 69
>25659_xla-mir-23a:mirbase
Length = 78
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaac 71
||||||||||||||||||||||||||
Sbjct: 49 aaatcacattgccagggatttccaac 74
>25713_xtr-mir-23a-1:mirbase
Length = 78
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaac 71
||||||||||||||||||||||||||
Sbjct: 49 aaatcacattgccagggatttccaac 74
>27343_mdo-mir-23a:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaac 71
||||||||||||||||||||||||||
Sbjct: 40 aaatcacattgccagggatttccaac 65
>31789_mmu-mir-23a:mirbase
Length = 75
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaac 71
||||||||||||||||||||||||||
Sbjct: 44 aaatcacattgccagggatttccaac 69
>32673_rno-mir-23a:mirbase
Length = 75
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaac 71
||||||||||||||||||||||||||
Sbjct: 44 aaatcacattgccagggatttccaac 69
>33926_ssc-mir-23a:mirbase
Length = 70
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggatttccaa 70
|||||||||||||||||||||||||
Sbjct: 40 aaatcacattgccagggatttccaa 64
>34224_dre-mir-23a-1:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 aaaatcacattgccagggatttcca 69
|||||||||||||||||||||||||
Sbjct: 53 aaaatcacattgccagggatttcca 77
>34557_fru-mir-23a-1:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 aaaatcacattgccagggatttcca 69
|||||||||||||||||||||||||
Sbjct: 53 aaaatcacattgccagggatttcca 77
>34705_tni-mir-23a-1:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 aaaatcacattgccagggatttcca 69
|||||||||||||||||||||||||
Sbjct: 53 aaaatcacattgccagggatttcca 77
>34225_dre-mir-23a-2:mirbase
Length = 98
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 aatcacattgccagggatttccaa 70
||||||||||||||||||||||||
Sbjct: 56 aatcacattgccagggatttccaa 79
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 13 attcctggcagagtgattt 31
|||||||||||||||||||
Sbjct: 21 attcctggcagagtgattt 39
>34559_fru-mir-23a-3:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 aatcacattgccagggatttccaa 70
||||||||||||||||||||||||
Sbjct: 52 aatcacattgccagggatttccaa 75
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 10 gggattcctggcagagtgattt 31
||||||||||||||||||||||
Sbjct: 14 gggattcctggcagagtgattt 35
>34707_tni-mir-23a-3:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 47 aatcacattgccagggatttccaa 70
||||||||||||||||||||||||
Sbjct: 53 aatcacattgccagggatttccaa 76
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 13 attcctggcagagtgattt 31
|||||||||||||||||||
Sbjct: 17 attcctggcagagtgattt 35
>34560_fru-mir-23b:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 43 ataaaatcacattgccagggatt 65
|||||||||||||||||||||||
Sbjct: 40 ataaaatcacattgccagggatt 62
>34708_tni-mir-23b:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 43 ataaaatcacattgccagggatt 65
|||||||||||||||||||||||
Sbjct: 40 ataaaatcacattgccagggatt 62
>25715_xtr-mir-23b:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taaaatcacattgccagggatt 65
||||||||||||||||||||||
Sbjct: 49 taaaatcacattgccagggatt 70
>25907_gga-mir-23b:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taaaatcacattgccagggatt 65
||||||||||||||||||||||
Sbjct: 48 taaaatcacattgccagggatt 69
>26412_tgu-mir-23:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taaaatcacattgccagggatt 65
||||||||||||||||||||||
Sbjct: 37 taaaatcacattgccagggatt 58
>26638_cfa-mir-23b:mirbase
Length = 54
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taaaatcacattgccagggatt 65
||||||||||||||||||||||
Sbjct: 32 taaaatcacattgccagggatt 53
>26960_eca-mir-23b:mirbase
Length = 74
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taaaatcacattgccagggatt 65
||||||||||||||||||||||
Sbjct: 42 taaaatcacattgccagggatt 63
>27666_mml-mir-23b:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taaaatcacattgccagggatt 65
||||||||||||||||||||||
Sbjct: 54 taaaatcacattgccagggatt 75
>28375_hsa-mir-23b:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taaaatcacattgccagggatt 65
||||||||||||||||||||||
Sbjct: 54 taaaatcacattgccagggatt 75
>30055_ppa-mir-23b:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taaaatcacattgccagggatt 65
||||||||||||||||||||||
Sbjct: 54 taaaatcacattgccagggatt 75
>30162_ptr-mir-23b:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taaaatcacattgccagggatt 65
||||||||||||||||||||||
Sbjct: 54 taaaatcacattgccagggatt 75
>30767_ppy-mir-23b:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taaaatcacattgccagggatt 65
||||||||||||||||||||||
Sbjct: 54 taaaatcacattgccagggatt 75
>31790_mmu-mir-23b:mirbase
Length = 74
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taaaatcacattgccagggatt 65
||||||||||||||||||||||
Sbjct: 42 taaaatcacattgccagggatt 63
>32674_rno-mir-23b:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taaaatcacattgccagggatt 65
||||||||||||||||||||||
Sbjct: 54 taaaatcacattgccagggatt 75
>33145_bta-mir-23b:mirbase
Length = 60
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taaaatcacattgccagggatt 65
||||||||||||||||||||||
Sbjct: 34 taaaatcacattgccagggatt 55
>33146_bta-mir-23b:mirbase
Length = 60
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taaaatcacattgccagggatt 65
||||||||||||||||||||||
Sbjct: 34 taaaatcacattgccagggatt 55
>33927_ssc-mir-23b:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 44 taaaatcacattgccagggatt 65
||||||||||||||||||||||
Sbjct: 46 taaaatcacattgccagggatt 67
>25442_pma-mir-23a:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 45 aaaatcacattgccagggatt 65
|||||||||||||||||||||
Sbjct: 47 aaaatcacattgccagggatt 67
>25443_pma-mir-23b:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 45 aaaatcacattgccagggatt 65
|||||||||||||||||||||
Sbjct: 51 aaaatcacattgccagggatt 71
>26637_cfa-mir-23a:mirbase
Length = 52
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 aaatcacattgccagggattt 66
|||||||||||||||||||||
Sbjct: 32 aaatcacattgccagggattt 52
>27344_mdo-mir-23b:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 45 aaaatcacattgccagggatt 65
|||||||||||||||||||||
Sbjct: 43 aaaatcacattgccagggatt 63
>34227_dre-mir-23b:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 45 aaaatcacattgccagggatt 65
|||||||||||||||||||||
Sbjct: 48 aaaatcacattgccagggatt 68
>31441_oan-mir-23b:mirbase
Length = 109
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 45 aaaatcacattgccagggat 64
||||||||||||||||||||
Sbjct: 60 aaaatcacattgccagggat 79
