miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25715_xtr-mir-23b:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 1 gtggctgtgtgggttcttggcatgctgatttgtga 35
|||||||| ||||||| ||||||||||||||||||
Sbjct: 6 gtggctgtttgggttcctggcatgctgatttgtga 40
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccacactacca 80
|||||||||||||||||||||||| ||||
Sbjct: 54 tcacattgccagggattaccacacaacca 82
>26960_eca-mir-23b:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 tgggttcttggcatgctgatttgtgact 37
||||||| ||||||||||||||||||||
Sbjct: 8 tgggttcctggcatgctgatttgtgact 35
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccac 73
||||||||||||||||||||||
Sbjct: 47 tcacattgccagggattaccac 68
>27344_mdo-mir-23b:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 tgggttcttggcatgctgatttgtgact 37
||||||| ||||||||||||||||||||
Sbjct: 8 tgggttcctggcatgctgatttgtgact 35
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccac 73
||||||||||||||||||||||
Sbjct: 47 tcacattgccagggattaccac 68
>27666_mml-mir-23b:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 tgggttcttggcatgctgatttgtgact 37
||||||| ||||||||||||||||||||
Sbjct: 20 tgggttcctggcatgctgatttgtgact 47
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccac 73
||||||||||||||||||||||
Sbjct: 59 tcacattgccagggattaccac 80
>28375_hsa-mir-23b:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 tgggttcttggcatgctgatttgtgact 37
||||||| ||||||||||||||||||||
Sbjct: 20 tgggttcctggcatgctgatttgtgact 47
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccac 73
||||||||||||||||||||||
Sbjct: 59 tcacattgccagggattaccac 80
>30055_ppa-mir-23b:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 tgggttcttggcatgctgatttgtgact 37
||||||| ||||||||||||||||||||
Sbjct: 20 tgggttcctggcatgctgatttgtgact 47
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccac 73
||||||||||||||||||||||
Sbjct: 59 tcacattgccagggattaccac 80
>30162_ptr-mir-23b:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 tgggttcttggcatgctgatttgtgact 37
||||||| ||||||||||||||||||||
Sbjct: 20 tgggttcctggcatgctgatttgtgact 47
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccac 73
||||||||||||||||||||||
Sbjct: 59 tcacattgccagggattaccac 80
>30767_ppy-mir-23b:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 tgggttcttggcatgctgatttgtgact 37
||||||| ||||||||||||||||||||
Sbjct: 20 tgggttcctggcatgctgatttgtgact 47
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccac 73
||||||||||||||||||||||
Sbjct: 59 tcacattgccagggattaccac 80
>31441_oan-mir-23b:mirbase
Length = 109
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 tgggttcttggcatgctgatttgtgact 37
||||||| ||||||||||||||||||||
Sbjct: 25 tgggttcctggcatgctgatttgtgact 52
>31790_mmu-mir-23b:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 tgggttcttggcatgctgatttgtgact 37
||||||| ||||||||||||||||||||
Sbjct: 8 tgggttcctggcatgctgatttgtgact 35
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccac 73
||||||||||||||||||||||
Sbjct: 47 tcacattgccagggattaccac 68
>32674_rno-mir-23b:mirbase
Length = 97
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 tgggttcttggcatgctgatttgtgact 37
||||||| ||||||||||||||||||||
Sbjct: 20 tgggttcctggcatgctgatttgtgact 47
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccac 73
||||||||||||||||||||||
Sbjct: 59 tcacattgccagggattaccac 80
>33927_ssc-mir-23b:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 10 tgggttcttggcatgctgatttgtgact 37
||||||| ||||||||||||||||||||
Sbjct: 12 tgggttcctggcatgctgatttgtgact 39
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccac 73
||||||||||||||||||||||
Sbjct: 51 tcacattgccagggattaccac 72
>34560_fru-mir-23b:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccacac 75
||||||||||||||||||||||||
Sbjct: 46 tcacattgccagggattaccacac 69
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 3 ggctgtgtgggttcttggcatgctgatttgtgact 37
||||||| |||||| |||| |||||||||||||||
Sbjct: 1 ggctgtgagggttcctggcgtgctgatttgtgact 35
>34708_tni-mir-23b:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccacac 75
||||||||||||||||||||||||
Sbjct: 46 tcacattgccagggattaccacac 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 3 ggctgtgtgggttcttggcatgctgatttgtgac 36
||||||| |||||| |||| ||||||||||||||
Sbjct: 1 ggctgtgagggttcctggcgtgctgatttgtgac 34
>25907_gga-mir-23b:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccaca 74
|||||||||||||||||||||||
Sbjct: 53 tcacattgccagggattaccaca 75
>33145_bta-mir-23b:mirbase
Length = 60
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 gggttcttggcatgctgatttgtgact 37
|||||| ||||||||||||||||||||
Sbjct: 1 gggttcctggcatgctgatttgtgact 27
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccac 73
||||||||||||||||||||||
Sbjct: 39 tcacattgccagggattaccac 60
>33146_bta-mir-23b:mirbase
Length = 60
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 gggttcttggcatgctgatttgtgact 37
|||||| ||||||||||||||||||||
Sbjct: 1 gggttcctggcatgctgatttgtgact 27
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccac 73
||||||||||||||||||||||
Sbjct: 39 tcacattgccagggattaccac 60
>25443_pma-mir-23b:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccac 73
||||||||||||||||||||||
Sbjct: 55 tcacattgccagggattaccac 76
>26412_tgu-mir-23:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattaccac 73
||||||||||||||||||||||
Sbjct: 42 tcacattgccagggattaccac 63
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 10 tgggttcttggcatgctgatttgtgact 37
||||||| ||||||| ||||||||||||
Sbjct: 3 tgggttcctggcatgatgatttgtgact 30
>26638_cfa-mir-23b:mirbase
Length = 54
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 13 gttcttggcatgctgatttgtgact 37
|||| ||||||||||||||||||||
Sbjct: 1 gttcctggcatgctgatttgtgact 25
>25442_pma-mir-23a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 tcacattgccagggattacc 71
||||||||||||||||||||
Sbjct: 51 tcacattgccagggattacc 70
