miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34709_tni-mir-24-1:mirbase
Length = 70
Score = 69.9 bits (35), Expect = 3e-13
Identities = 57/63 (90%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 13 gtgccttctgagctgatat-cagttgtagtaaatcactggctcagttcagcaggaacagg 71
|||||| |||||||||||| |||||||| || ||||||||||||||||||||||||||
Sbjct: 7 gtgcctactgagctgatatgcagttgtacagaaccactggctcagttcagcaggaacagg 66
Query: 72 agt 74
|||
Sbjct: 67 agt 69
>31442_oan-mir-24:mirbase
Length = 84
Score = 67.9 bits (34), Expect = 1e-12
Identities = 65/74 (87%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 8 ctccggtgccttctgagctgatatcagttgtagtaaatc-actggctcagttcagcagga 66
|||| |||||| ||||||||||||||||| | || | | ||||||||||||||||||||
Sbjct: 10 ctccagtgcctactgagctgatatcagttctcgttgacccactggctcagttcagcagga 69
Query: 67 acaggagtgtggcc 80
||||||||| ||||
Sbjct: 70 acaggagtgcggcc 83
>26413_tgu-mir-24:mirbase
Length = 132
Score = 60.0 bits (30), Expect = 2e-10
Identities = 60/69 (86%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 8 ctccggtgccttctgagctgatatcagttgtagta--aatcactggctcagttcagcagg 65
||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 58 ctccggtgcctactgagctgatatcagttctgattttacacactggctcagttcagcagg 117
Query: 66 aacaggagt 74
|||||||||
Sbjct: 118 aacaggagt 126
>29230_hsa-mir-3074:mirbase
Length = 81
Score = 60.0 bits (30), Expect = 2e-10
Identities = 60/69 (86%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 8 ctccggtgccttctgagctgatatcagttgtagta--aatcactggctcagttcagcagg 65
||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 74 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 15
Query: 66 aacaggagt 74
|||||||||
Sbjct: 14 aacaggagt 6
>29231_hsa-mir-3074:mirbase
Length = 81
Score = 60.0 bits (30), Expect = 2e-10
Identities = 60/69 (86%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 8 ctccggtgccttctgagctgatatcagttgtagta--aatcactggctcagttcagcagg 65
||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 74 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 15
Query: 66 aacaggagt 74
|||||||||
Sbjct: 14 aacaggagt 6
>32511_mmu-mir-3074-1:mirbase
Length = 85
Score = 60.0 bits (30), Expect = 2e-10
Identities = 60/69 (86%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 8 ctccggtgccttctgagctgatatcagttgtagta--aatcactggctcagttcagcagg 65
||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 76 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 17
Query: 66 aacaggagt 74
|||||||||
Sbjct: 16 aacaggagt 8
>32512_mmu-mir-3074-1:mirbase
Length = 85
Score = 60.0 bits (30), Expect = 2e-10
Identities = 60/69 (86%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 8 ctccggtgccttctgagctgatatcagttgtagta--aatcactggctcagttcagcagg 65
||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 76 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 17
Query: 66 aacaggagt 74
|||||||||
Sbjct: 16 aacaggagt 8
>33024_rno-mir-3074:mirbase
Length = 117
Score = 60.0 bits (30), Expect = 2e-10
Identities = 60/69 (86%), Gaps = 2/69 (2%)
Strand = Plus / Minus
Query: 8 ctccggtgccttctgagctgatatcagttgtagta--aatcactggctcagttcagcagg 65
||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 89 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 30
Query: 66 aacaggagt 74
|||||||||
Sbjct: 29 aacaggagt 21
>33929_ssc-mir-24-2:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 2e-10
Identities = 60/69 (86%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 8 ctccggtgccttctgagctgatatcagttgtagta--aatcactggctcagttcagcagg 65
||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 9 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 68
Query: 66 aacaggagt 74
|||||||||
Sbjct: 69 aacaggagt 77
>26962_eca-mir-24-2:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 1e-09
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 8 ctccggtgccttctgagctgatatcagttgtagta--aatcactggctcagttcagcagg 65
||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 66 aacaggag 73
||||||||
Sbjct: 61 aacaggag 68
>27667_mml-mir-24-1:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 1e-09
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 8 ctccggtgccttctgagctgatatcagttgtagta--aatcactggctcagttcagcagg 65
||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 66 aacaggag 73
||||||||
Sbjct: 61 aacaggag 68
>28183_mne-mir-24-1:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 1e-09
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 8 ctccggtgccttctgagctgatatcagttgtagta--aatcactggctcagttcagcagg 65
||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 66 aacaggag 73
||||||||
Sbjct: 61 aacaggag 68
>28377_hsa-mir-24-1:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 1e-09
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 8 ctccggtgccttctgagctgatatcagttgtagta--aatcactggctcagttcagcagg 65
||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 66 aacaggag 73
||||||||
Sbjct: 61 aacaggag 68
>30056_ppa-mir-24-1:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 1e-09
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 8 ctccggtgccttctgagctgatatcagttgtagta--aatcactggctcagttcagcagg 65
||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 66 aacaggag 73
||||||||
Sbjct: 61 aacaggag 68
>30768_ppy-mir-24-1:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 1e-09
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 8 ctccggtgccttctgagctgatatcagttgtagta--aatcactggctcagttcagcagg 65
||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 66 aacaggag 73
||||||||
Sbjct: 61 aacaggag 68
>31791_mmu-mir-24-1:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 1e-09
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 8 ctccggtgccttctgagctgatatcagttgtagta--aatcactggctcagttcagcagg 65
||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
Query: 66 aacaggag 73
||||||||
Sbjct: 61 aacaggag 68
>31792_mmu-mir-24-2:mirbase
Length = 107
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 46 cactggctcagttcagcaggaacaggagt 74
|||||||||||||||||||||||||||||
Sbjct: 58 cactggctcagttcagcaggaacaggagt 86
>32513_mmu-mir-3074-2:mirbase
Length = 83
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 46 cactggctcagttcagcaggaacaggagt 74
|||||||||||||||||||||||||||||
Sbjct: 36 cactggctcagttcagcaggaacaggagt 8
>32514_mmu-mir-3074-2:mirbase
Length = 83
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 46 cactggctcagttcagcaggaacaggagt 74
|||||||||||||||||||||||||||||
Sbjct: 36 cactggctcagttcagcaggaacaggagt 8
>32675_rno-mir-24-1:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 1e-09
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 8 ctccggtgccttctgagctgatatcagttgtagta--aatcactggctcagttcagcagg 65
||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcatttcacacactggctcagttcagcagg 60
Query: 66 aacaggag 73
||||||||
Sbjct: 61 aacaggag 68
>32676_rno-mir-24-2:mirbase
Length = 108
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 46 cactggctcagttcagcaggaacaggagt 74
|||||||||||||||||||||||||||||
Sbjct: 58 cactggctcagttcagcaggaacaggagt 86
>33147_bta-mir-24-1:mirbase
Length = 68
Score = 58.0 bits (29), Expect = 1e-09
Identities = 59/68 (86%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 8 ctccggtgccttctgagctgatatcagttgtagta--aatcactggctcagttcagcagg 65
||||||||||| ||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 1 ctccggtgcctactgagctgatatcagttctcattttacacactggctcagttcagcagg 60
Query: 66 aacaggag 73
||||||||
Sbjct: 61 aacaggag 68
>34230_dre-mir-24-3:mirbase
Length = 142
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 46 cactggctcagttcagcaggaacaggagt 74
|||||||||||||||||||||||||||||
Sbjct: 77 cactggctcagttcagcaggaacaggagt 105
>25716_xtr-mir-24a:mirbase
Length = 67
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 cactggctcagttcagcaggaacaggag 73
||||||||||||||||||||||||||||
Sbjct: 40 cactggctcagttcagcaggaacaggag 67
>25717_xtr-mir-24a:mirbase
Length = 67
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 cactggctcagttcagcaggaacaggag 73
||||||||||||||||||||||||||||
Sbjct: 40 cactggctcagttcagcaggaacaggag 67
>27346_mdo-mir-24-2:mirbase
Length = 73
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 actggctcagttcagcaggaacaggagt 74
||||||||||||||||||||||||||||
Sbjct: 44 actggctcagttcagcaggaacaggagt 71
>30163_ptr-mir-24-1:mirbase
Length = 67
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 cactggctcagttcagcaggaacaggag 73
||||||||||||||||||||||||||||
Sbjct: 40 cactggctcagttcagcaggaacaggag 67
>34561_fru-mir-24-1:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 actggctcagttcagcaggaacaggagt 74
||||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacaggagt 79
>34562_fru-mir-24-1:mirbase
Length = 79
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 47 actggctcagttcagcaggaacaggagt 74
||||||||||||||||||||||||||||
Sbjct: 52 actggctcagttcagcaggaacaggagt 79
>25908_gga-mir-24:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 47 actggctcagttcagcaggaacaggag 73
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>26961_eca-mir-24:mirbase
Length = 68
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 47 actggctcagttcagcaggaacaggag 73
|||||||||||||||||||||||||||
Sbjct: 42 actggctcagttcagcaggaacaggag 68
>27668_mml-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 cactggctcagttcagcaggaacagga 72
|||||||||||||||||||||||||||
Sbjct: 47 cactggctcagttcagcaggaacagga 73
>28184_mne-mir-24-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 46 cactggctcagttcagcaggaacagga 72
|||||||||||||||||||||||||||
Sbjct: 47 cactggctcagttcagcaggaacagga 73
>26639_cfa-mir-24-1:mirbase
Length = 62
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 cactggctcagttcagcaggaacagg 71
||||||||||||||||||||||||||
Sbjct: 37 cactggctcagttcagcaggaacagg 62
>28270_ggo-mir-24:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 cactggctcagttcagcaggaacagg 71
||||||||||||||||||||||||||
Sbjct: 47 cactggctcagttcagcaggaacagg 72
>28378_hsa-mir-24-2:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 cactggctcagttcagcaggaacagg 71
||||||||||||||||||||||||||
Sbjct: 47 cactggctcagttcagcaggaacagg 72
>30057_ppa-mir-24-2:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 cactggctcagttcagcaggaacagg 71
||||||||||||||||||||||||||
Sbjct: 47 cactggctcagttcagcaggaacagg 72
>30164_ptr-mir-24-2:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 cactggctcagttcagcaggaacagg 71
||||||||||||||||||||||||||
Sbjct: 47 cactggctcagttcagcaggaacagg 72
>30769_ppy-mir-24-2:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 cactggctcagttcagcaggaacagg 71
||||||||||||||||||||||||||
Sbjct: 47 cactggctcagttcagcaggaacagg 72
>33148_bta-mir-24-2:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 46 cactggctcagttcagcaggaacagg 71
||||||||||||||||||||||||||
Sbjct: 47 cactggctcagttcagcaggaacagg 72
>25444_pma-mir-24:mirbase
Length = 94
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 46 cactggctcagttcagcaggaacag 70
|||||||||||||||||||||||||
Sbjct: 55 cactggctcagttcagcaggaacag 79
>26640_cfa-mir-24-2:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 actggctcagttcagcaggaacagg 71
|||||||||||||||||||||||||
Sbjct: 38 actggctcagttcagcaggaacagg 62
>33928_ssc-mir-24-1:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 actggctcagttcagcaggaacagg 71
|||||||||||||||||||||||||
Sbjct: 48 actggctcagttcagcaggaacagg 72
>34229_dre-mir-24-2:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 47 actggctcagttcagcaggaacagg 71
|||||||||||||||||||||||||
Sbjct: 49 actggctcagttcagcaggaacagg 73
>34231_dre-mir-24-4:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 ctggctcagttcagcaggaacagg 71
||||||||||||||||||||||||
Sbjct: 55 ctggctcagttcagcaggaacagg 78
>34563_fru-mir-24-2:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 ctggctcagttcagcaggaacagg 71
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>34710_tni-mir-24-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 ctggctcagttcagcaggaacagg 71
||||||||||||||||||||||||
Sbjct: 50 ctggctcagttcagcaggaacagg 73
>27345_mdo-mir-24-1:mirbase
Length = 57
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 46 cactggctcagttcagcagga 66
|||||||||||||||||||||
Sbjct: 37 cactggctcagttcagcagga 57
>25660_xla-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 48 ctggctcagttcagcagga 66
|||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62
>25718_xtr-mir-24b:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 48 ctggctcagttcagcagga 66
|||||||||||||||||||
Sbjct: 44 ctggctcagttcagcagga 62
