miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34564_fru-mir-25:mirbase
Length = 82
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 9 tgagaggcggagacttgggcagctgccgtcattcccagaaggcattgcacttgtctcggt 68
||||||||||||||||||||| ||||| | || |||| ||||||||||||||||||||
Sbjct: 9 tgagaggcggagacttgggcaattgccggccatcacagagggcattgcacttgtctcggt 68
Query: 69 ctgacagtggcggc 82
||||||||| ||||
Sbjct: 69 ctgacagtgccggc 82
>34711_tni-mir-25:mirbase
Length = 82
Score = 83.8 bits (42), Expect = 2e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 9 tgagaggcggagacttgggcagctgccgtcattcccagaaggcattgcacttgtctcggt 68
||||||||||||||||||||| ||||| | || |||| ||||||||||||||||||||
Sbjct: 9 tgagaggcggagacttgggcaattgccggccatcacagagggcattgcacttgtctcggt 68
Query: 69 ctgacagtggcggc 82
||||||||| ||||
Sbjct: 69 ctgacagtgccggc 82
>26963_eca-mir-25:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 49 ggcattgcacttgtctcggtctgacagtggcggc 82
||||||||||||||||||||||||||||| ||||
Sbjct: 50 ggcattgcacttgtctcggtctgacagtgccggc 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tgagaggcggagacttgggca 29
|||||||||||||||||||||
Sbjct: 10 tgagaggcggagacttgggca 30
>27550_lla-mir-25:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 49 ggcattgcacttgtctcggtctgacagtggcggc 82
||||||||||||||||||||||||||||| ||||
Sbjct: 50 ggcattgcacttgtctcggtctgacagtgccggc 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tgagaggcggagacttgggca 29
|||||||||||||||||||||
Sbjct: 10 tgagaggcggagacttgggca 30
>27669_mml-mir-25:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 49 ggcattgcacttgtctcggtctgacagtggcggc 82
||||||||||||||||||||||||||||| ||||
Sbjct: 50 ggcattgcacttgtctcggtctgacagtgccggc 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tgagaggcggagacttgggca 29
|||||||||||||||||||||
Sbjct: 10 tgagaggcggagacttgggca 30
>28185_mne-mir-25:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 49 ggcattgcacttgtctcggtctgacagtggcggc 82
||||||||||||||||||||||||||||| ||||
Sbjct: 50 ggcattgcacttgtctcggtctgacagtgccggc 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tgagaggcggagacttgggca 29
|||||||||||||||||||||
Sbjct: 10 tgagaggcggagacttgggca 30
>28271_ggo-mir-25:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 49 ggcattgcacttgtctcggtctgacagtggcggc 82
||||||||||||||||||||||||||||| ||||
Sbjct: 50 ggcattgcacttgtctcggtctgacagtgccggc 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tgagaggcggagacttgggca 29
|||||||||||||||||||||
Sbjct: 10 tgagaggcggagacttgggca 30
>28379_hsa-mir-25:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 49 ggcattgcacttgtctcggtctgacagtggcggc 82
||||||||||||||||||||||||||||| ||||
Sbjct: 50 ggcattgcacttgtctcggtctgacagtgccggc 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tgagaggcggagacttgggca 29
|||||||||||||||||||||
Sbjct: 10 tgagaggcggagacttgggca 30
>30058_ppa-mir-25:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 49 ggcattgcacttgtctcggtctgacagtggcggc 82
||||||||||||||||||||||||||||| ||||
Sbjct: 50 ggcattgcacttgtctcggtctgacagtgccggc 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tgagaggcggagacttgggca 29
|||||||||||||||||||||
Sbjct: 10 tgagaggcggagacttgggca 30
>30770_ppy-mir-25:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 49 ggcattgcacttgtctcggtctgacagtggcggc 82
||||||||||||||||||||||||||||| ||||
Sbjct: 50 ggcattgcacttgtctcggtctgacagtgccggc 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tgagaggcggagacttgggca 29
|||||||||||||||||||||
Sbjct: 10 tgagaggcggagacttgggca 30
>31793_mmu-mir-25:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 49 ggcattgcacttgtctcggtctgacagtggcggc 82
||||||||||||||||||||||||||||| ||||
Sbjct: 50 ggcattgcacttgtctcggtctgacagtgccggc 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tgagaggcggagacttgggca 29
|||||||||||||||||||||
Sbjct: 10 tgagaggcggagacttgggca 30
>32677_rno-mir-25:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 49 ggcattgcacttgtctcggtctgacagtggcggc 82
||||||||||||||||||||||||||||| ||||
Sbjct: 50 ggcattgcacttgtctcggtctgacagtgccggc 83
>33149_bta-mir-25:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 49 ggcattgcacttgtctcggtctgacagtggcggc 82
||||||||||||||||||||||||||||| ||||
Sbjct: 50 ggcattgcacttgtctcggtctgacagtgccggc 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tgagaggcggagacttgggca 29
|||||||||||||||||||||
Sbjct: 10 tgagaggcggagacttgggca 30
>25719_xtr-mir-25-1:mirbase
Length = 82
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 50 gcattgcacttgtctcggtctgacagtggcggc 82
|||||||||||||||||||||||||||| ||||
Sbjct: 50 gcattgcacttgtctcggtctgacagtgtcggc 82
>25720_xtr-mir-25-2:mirbase
Length = 82
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 50 gcattgcacttgtctcggtctgacagtggcggc 82
|||||||||||||||||||||||||||| ||||
Sbjct: 50 gcattgcacttgtctcggtctgacagtgtcggc 82
>27347_mdo-mir-25:mirbase
Length = 83
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 49 ggcattgcacttgtctcggtctgacagtg 77
|||||||||||||||||||||||||||||
Sbjct: 50 ggcattgcacttgtctcggtctgacagtg 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tgagaggcggagacttgggca 29
|||||||||||||||||||||
Sbjct: 10 tgagaggcggagacttgggca 30
>26641_cfa-mir-25:mirbase
Length = 59
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 50 gcattgcacttgtctcggtctga 72
|||||||||||||||||||||||
Sbjct: 37 gcattgcacttgtctcggtctga 59
>30165_ptr-mir-25:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 9 tgagaggcggagacttgggca 29
|||||||||||||||||||||
Sbjct: 10 tgagaggcggagacttgggca 30
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 49 ggcattgcacttgtctcgg 67
|||||||||||||||||||
Sbjct: 50 ggcattgcacttgtctcgg 68
