miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25909_gga-mir-26a:mirbase
Length = 77
Score = 60.0 bits (30), Expect = 4e-10
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 33 acctggttcaagtaatccaggataggctttgtggactagggttggcctgttcttggttac 92
|||||||||||||||||||||||||||| | | | | | |||||| |||||||||||
Sbjct: 4 acctggttcaagtaatccaggataggctgtatccattcctgctggcctattcttggttac 63
Query: 93 ttgcactggg 102
||||||||||
Sbjct: 64 ttgcactggg 73
>25446_pma-mir-26a-1:mirbase
Length = 87
Score = 56.0 bits (28), Expect = 7e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 29 tgcaacctggttcaagtaatccaggataggct 60
|||| |||||||||||||||||||||||||||
Sbjct: 4 tgcagcctggttcaagtaatccaggataggct 35
>27350_mdo-mir-26-3:mirbase
Length = 70
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 33 acctggttcaagtaatccaggataggct 60
||||||||||||||||||||||||||||
Sbjct: 1 acctggttcaagtaatccaggataggct 28
>34233_dre-mir-26a-1:mirbase
Length = 78
Score = 56.0 bits (28), Expect = 7e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 34 cctggttcaagtaatccaggataggctt 61
||||||||||||||||||||||||||||
Sbjct: 6 cctggttcaagtaatccaggataggctt 33
>25721_xtr-mir-26-1:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 34 cctggttcaagtaatccaggataggct 60
|||||||||||||||||||||||||||
Sbjct: 9 cctggttcaagtaatccaggataggct 35
>26414_tgu-mir-26-1:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 34 cctggttcaagtaatccaggataggct 60
|||||||||||||||||||||||||||
Sbjct: 6 cctggttcaagtaatccaggataggct 32
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 77 gcctgttcttggttacttgcactg 100
|||| |||||||||||||||||||
Sbjct: 49 gcctattcttggttacttgcactg 72
>26415_tgu-mir-26-2:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 34 cctggttcaagtaatccaggataggct 60
|||||||||||||||||||||||||||
Sbjct: 6 cctggttcaagtaatccaggataggct 32
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 77 gcctgttcttggttacttgcactg 100
|||| |||||||||||||||||||
Sbjct: 49 gcctattcttggttacttgcactg 72
>34565_fru-mir-26:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 34 cctggttcaagtaatccaggataggct 60
|||||||||||||||||||||||||||
Sbjct: 10 cctggttcaagtaatccaggataggct 36
>34712_tni-mir-26:mirbase
Length = 96
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 34 cctggttcaagtaatccaggataggct 60
|||||||||||||||||||||||||||
Sbjct: 15 cctggttcaagtaatccaggataggct 41
>34236_dre-mir-26b:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 34 cctggttcaagtaatccaggatagg 58
|||||||||||||||||||||||||
Sbjct: 15 cctggttcaagtaatccaggatagg 39
>31443_oan-mir-26:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 37 ggttcaagtaatccaggataggct 60
||||||||||||||||||||||||
Sbjct: 12 ggttcaagtaatccaggataggct 35
>25447_pma-mir-26a-2:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 gttcaagtaatccaggataggct 60
|||||||||||||||||||||||
Sbjct: 18 gttcaagtaatccaggataggct 40
>26965_eca-mir-26a-2:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 gttcaagtaatccaggataggct 60
|||||||||||||||||||||||
Sbjct: 9 gttcaagtaatccaggataggct 31
>27551_lla-mir-26a:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 gttcaagtaatccaggataggct 60
|||||||||||||||||||||||
Sbjct: 9 gttcaagtaatccaggataggct 31
>27670_mml-mir-26a-1:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 gttcaagtaatccaggataggct 60
|||||||||||||||||||||||
Sbjct: 9 gttcaagtaatccaggataggct 31
>28186_mne-mir-26a:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 gttcaagtaatccaggataggct 60
|||||||||||||||||||||||
Sbjct: 9 gttcaagtaatccaggataggct 31
>28272_ggo-mir-26a:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 gttcaagtaatccaggataggct 60
|||||||||||||||||||||||
Sbjct: 9 gttcaagtaatccaggataggct 31
>28380_hsa-mir-26a-1:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 gttcaagtaatccaggataggct 60
|||||||||||||||||||||||
Sbjct: 9 gttcaagtaatccaggataggct 31
>30059_ppa-mir-26a:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 gttcaagtaatccaggataggct 60
|||||||||||||||||||||||
Sbjct: 9 gttcaagtaatccaggataggct 31
>30166_ptr-mir-26a-1:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 gttcaagtaatccaggataggct 60
|||||||||||||||||||||||
Sbjct: 9 gttcaagtaatccaggataggct 31
>30771_ppy-mir-26a:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 gttcaagtaatccaggataggct 60
|||||||||||||||||||||||
Sbjct: 9 gttcaagtaatccaggataggct 31
>31794_mmu-mir-26a-1:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 gttcaagtaatccaggataggct 60
|||||||||||||||||||||||
Sbjct: 15 gttcaagtaatccaggataggct 37
>32678_rno-mir-26a:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 gttcaagtaatccaggataggct 60
|||||||||||||||||||||||
Sbjct: 15 gttcaagtaatccaggataggct 37
>33150_bta-mir-26a-1:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 gttcaagtaatccaggataggct 60
|||||||||||||||||||||||
Sbjct: 15 gttcaagtaatccaggataggct 37
>33153_bta-mir-26c:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 38 gttcaagtaatccaggataggct 60
|||||||||||||||||||||||
Sbjct: 76 gttcaagtaatccaggataggct 54
>34234_dre-mir-26a-2:mirbase
Length = 128
Score = 46.1 bits (23), Expect = 7e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 38 gttcaagtaatccaggataggct 60
|||||||||||||||||||||||
Sbjct: 36 gttcaagtaatccaggataggct 58
>25722_xtr-mir-26-2:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 ttcaagtaatccaggataggct 60
||||||||||||||||||||||
Sbjct: 12 ttcaagtaatccaggataggct 33
>26642_cfa-mir-26a-1:mirbase
Length = 61
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 ttcaagtaatccaggataggct 60
||||||||||||||||||||||
Sbjct: 1 ttcaagtaatccaggataggct 22
>26643_cfa-mir-26a-2:mirbase
Length = 60
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 ttcaagtaatccaggataggct 60
||||||||||||||||||||||
Sbjct: 1 ttcaagtaatccaggataggct 22
>26964_eca-mir-26a:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 ttcaagtaatccaggataggct 60
||||||||||||||||||||||
Sbjct: 14 ttcaagtaatccaggataggct 35
>27348_mdo-mir-26-1:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 ttcaagtaatccaggataggct 60
||||||||||||||||||||||
Sbjct: 1 ttcaagtaatccaggataggct 22
>27349_mdo-mir-26-2:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 ttcaagtaatccaggataggct 60
||||||||||||||||||||||
Sbjct: 5 ttcaagtaatccaggataggct 26
>27671_mml-mir-26a-2:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 ttcaagtaatccaggataggct 60
||||||||||||||||||||||
Sbjct: 14 ttcaagtaatccaggataggct 35
>28381_hsa-mir-26a-2:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 ttcaagtaatccaggataggct 60
||||||||||||||||||||||
Sbjct: 14 ttcaagtaatccaggataggct 35
>30167_ptr-mir-26a-2:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 ttcaagtaatccaggataggct 60
||||||||||||||||||||||
Sbjct: 13 ttcaagtaatccaggataggct 34
>30772_ppy-mir-26a-2:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 ttcaagtaatccaggataggct 60
||||||||||||||||||||||
Sbjct: 14 ttcaagtaatccaggataggct 35
>31795_mmu-mir-26a-2:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 ttcaagtaatccaggataggct 60
||||||||||||||||||||||
Sbjct: 14 ttcaagtaatccaggataggct 35
>33151_bta-mir-26a-2:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 ttcaagtaatccaggataggct 60
||||||||||||||||||||||
Sbjct: 14 ttcaagtaatccaggataggct 35
>33930_ssc-mir-26a:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 39 ttcaagtaatccaggataggct 60
||||||||||||||||||||||
Sbjct: 14 ttcaagtaatccaggataggct 35
>25448_pma-mir-26b:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 34 cctggttcaagtaatccaggatagg 58
|||| ||||||||||||||||||||
Sbjct: 11 cctgattcaagtaatccaggatagg 35