miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27351_mdo-mir-27a:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccgctcc 102
||||||||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttccgctcc 79
>25723_xtr-mir-27a:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccgctcctc 104
||||||||||||||||||||||| ||||
Sbjct: 49 tgttcacagtggctaagttccgcgcctc 76
>26966_eca-mir-27a:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 76 atgttcacagtggctaagttccgc 99
||||||||||||||||||||||||
Sbjct: 48 atgttcacagtggctaagttccgc 71
>27491_age-mir-27a:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 76 atgttcacagtggctaagttccgc 99
||||||||||||||||||||||||
Sbjct: 48 atgttcacagtggctaagttccgc 71
>27599_sla-mir-27a:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 76 atgttcacagtggctaagttccgc 99
||||||||||||||||||||||||
Sbjct: 48 atgttcacagtggctaagttccgc 71
>31404_lca-mir-27a:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 76 atgttcacagtggctaagttccgc 99
||||||||||||||||||||||||
Sbjct: 48 atgttcacagtggctaagttccgc 71
>31444_oan-mir-27a:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccgctcctc 104
||||||||||||||||||||||| ||||
Sbjct: 51 tgttcacagtggctaagttccgcccctc 78
>25725_xtr-mir-27c-1:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 6e-06
Identities = 54/63 (85%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 35 gcaggacttagctcactctgtgaacagatctcggatatcctatgttcacagtggctaagt 94
||||||||||||| |||||||||||| ||| | | || |||||||||||||||||||
Sbjct: 11 gcaggacttagctggctctgtgaacaggtcttgtgtgtca-atgttcacagtggctaagt 69
Query: 95 tcc 97
|||
Sbjct: 70 tcc 72
>25726_xtr-mir-27c-2:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 6e-06
Identities = 54/63 (85%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 35 gcaggacttagctcactctgtgaacagatctcggatatcctatgttcacagtggctaagt 94
||||||||||||| |||||||||||| ||| | | || |||||||||||||||||||
Sbjct: 11 gcaggacttagctggctctgtgaacaggtcttgtgtgtca-atgttcacagtggctaagt 69
Query: 95 tcc 97
|||
Sbjct: 70 tcc 72
>27673_mml-mir-27a:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccgc 99
|||||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttccgc 71
>28187_mne-mir-27a:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccgc 99
|||||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttccgc 71
>28273_ggo-mir-27a:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccgc 99
|||||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttccgc 71
>28383_hsa-mir-27a:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccgc 99
|||||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttccgc 71
>30060_ppa-mir-27a:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccgc 99
|||||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttccgc 71
>30169_ptr-mir-27a:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccgc 99
|||||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttccgc 71
>30774_ppy-mir-27a:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccgc 99
|||||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttccgc 71
>31797_mmu-mir-27a:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccgc 99
|||||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttccgc 76
>32680_rno-mir-27a:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccgc 99
|||||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttccgc 76
>33154_bta-mir-27a:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccgc 99
|||||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttccgc 74
>33155_bta-mir-27a:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccgc 99
|||||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttccgc 74
>33931_ssc-mir-27a:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccgc 99
|||||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttccgc 74
>26645_cfa-mir-27a:mirbase
Length = 60
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttccg 98
||||||||||||||||||||||
Sbjct: 39 tgttcacagtggctaagttccg 60
>25449_pma-mir-27a:mirbase
Length = 75
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttcc 97
|||||||||||||||||||||
Sbjct: 48 tgttcacagtggctaagttcc 68
>25450_pma-mir-27b:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 47 tgttcacagtggctaagttc 66
>25724_xtr-mir-27b:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78
>25910_gga-mir-27b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78
>26416_tgu-mir-27:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78
>26646_cfa-mir-27b:mirbase
Length = 63
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 41 tgttcacagtggctaagttc 60
>26967_eca-mir-27b:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 47 tgttcacagtggctaagttc 66
>27352_mdo-mir-27b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78
>27674_mml-mir-27b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78
>28384_hsa-mir-27b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78
>30170_ptr-mir-27b:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 58 tgttcacagtggctaagttc 77
>30775_ppy-mir-27b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78
>31445_oan-mir-27b:mirbase
Length = 117
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 70 tgttcacagtggctaagttc 89
>31798_mmu-mir-27b:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 47 tgttcacagtggctaagttc 66
>32681_rno-mir-27b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78
>33156_bta-mir-27b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 59 tgttcacagtggctaagttc 78
>33932_ssc-mir-27b:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 50 tgttcacagtggctaagttc 69
>34238_dre-mir-27b:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 55 tgttcacagtggctaagttc 74
>34240_dre-mir-27d:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 55 tgttcacagtggctaagttc 74
>34241_dre-mir-27e:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 63 tgttcacagtggctaagttc 82
>34566_fru-mir-27b:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 47 tgttcacagtggctaagttc 66
>34568_fru-mir-27e:mirbase
Length = 100
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 58 tgttcacagtggctaagttc 77
>34713_tni-mir-27b:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 47 tgttcacagtggctaagttc 66
>34715_tni-mir-27e:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 tgttcacagtggctaagttc 96
||||||||||||||||||||
Sbjct: 58 tgttcacagtggctaagttc 77
