miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25724_xtr-mir-27b:mirbase
Length = 96
Score = 111 bits (56), Expect = 9e-26
Identities = 76/82 (92%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 12 aggtgcagagcttagctgattggtgaacagtgattga---actctttgttcacagtggct 68
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattgattccctctttgttcacagtggct 72
Query: 69 aagttctgcatctgaggagagg 90
|||||||||| |||| ||||||
Sbjct: 73 aagttctgcacctgaagagagg 94
>25910_gga-mir-27b:mirbase
Length = 97
Score = 99.6 bits (50), Expect = 3e-22
Identities = 73/80 (91%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 12 aggtgcagagcttagctgattggtgaacagtgattg---aactctttgttcacagtggct 68
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattgtttccctctttgttcacagtggct 72
Query: 69 aagttctgcatctgaggaga 88
|||||||||| |||| ||||
Sbjct: 73 aagttctgcacctgaagaga 92
>26416_tgu-mir-27:mirbase
Length = 91
Score = 97.6 bits (49), Expect = 1e-21
Identities = 69/75 (92%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 12 aggtgcagagcttagctgattggtgaacagtgattg---aactctttgttcacagtggct 68
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattgttttcctctttgttcacagtggct 72
Query: 69 aagttctgcatctga 83
|||||||||| ||||
Sbjct: 73 aagttctgcacctga 87
>31445_oan-mir-27b:mirbase
Length = 117
Score = 93.7 bits (47), Expect = 2e-20
Identities = 61/65 (93%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 16 gcagagcttagctgattggtgaacagtgat---tgaactctttgttcacagtggctaagt 72
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 28 gcagagcttagctgattggtgaacagtgattgctggactctttgttcacagtggctaagt 87
Query: 73 tctgc 77
|||||
Sbjct: 88 tctgc 92
>34566_fru-mir-27b:mirbase
Length = 74
Score = 93.7 bits (47), Expect = 2e-20
Identities = 61/65 (93%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 17 cagagcttagctgattggtgaacagtgattga---actctttgttcacagtggctaagtt 73
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
Query: 74 ctgca 78
|||||
Sbjct: 66 ctgca 70
>34713_tni-mir-27b:mirbase
Length = 74
Score = 93.7 bits (47), Expect = 2e-20
Identities = 61/65 (93%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 17 cagagcttagctgattggtgaacagtgattga---actctttgttcacagtggctaagtt 73
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 6 cagagcttagctgattggtgaacagtgattgatttcctctttgttcacagtggctaagtt 65
Query: 74 ctgca 78
|||||
Sbjct: 66 ctgca 70
>27674_mml-mir-27b:mirbase
Length = 97
Score = 91.7 bits (46), Expect = 8e-20
Identities = 72/80 (90%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 12 aggtgcagagcttagctgattggtgaacagtgattg---aactctttgttcacagtggct 68
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 72
Query: 69 aagttctgcatctgaggaga 88
|||||||||| |||| ||||
Sbjct: 73 aagttctgcacctgaagaga 92
>28384_hsa-mir-27b:mirbase
Length = 97
Score = 91.7 bits (46), Expect = 8e-20
Identities = 72/80 (90%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 12 aggtgcagagcttagctgattggtgaacagtgattg---aactctttgttcacagtggct 68
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 72
Query: 69 aagttctgcatctgaggaga 88
|||||||||| |||| ||||
Sbjct: 73 aagttctgcacctgaagaga 92
>30170_ptr-mir-27b:mirbase
Length = 96
Score = 91.7 bits (46), Expect = 8e-20
Identities = 72/80 (90%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 12 aggtgcagagcttagctgattggtgaacagtgattg---aactctttgttcacagtggct 68
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 12 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 71
Query: 69 aagttctgcatctgaggaga 88
|||||||||| |||| ||||
Sbjct: 72 aagttctgcacctgaagaga 91
>30775_ppy-mir-27b:mirbase
Length = 97
Score = 91.7 bits (46), Expect = 8e-20
Identities = 72/80 (90%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 12 aggtgcagagcttagctgattggtgaacagtgattg---aactctttgttcacagtggct 68
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 72
Query: 69 aagttctgcatctgaggaga 88
|||||||||| |||| ||||
Sbjct: 73 aagttctgcacctgaagaga 92
>32681_rno-mir-27b:mirbase
Length = 97
Score = 91.7 bits (46), Expect = 8e-20
Identities = 72/80 (90%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 12 aggtgcagagcttagctgattggtgaacagtgattg---aactctttgttcacagtggct 68
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 72
Query: 69 aagttctgcatctgaggaga 88
|||||||||| |||| ||||
Sbjct: 73 aagttctgcacctgaagaga 92
>31798_mmu-mir-27b:mirbase
Length = 73
Score = 87.7 bits (44), Expect = 1e-18
Identities = 64/70 (91%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 12 aggtgcagagcttagctgattggtgaacagtgattg---aactctttgttcacagtggct 68
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 1 aggtgcagagcttagctgattggtgaacagtgattggtttccgctttgttcacagtggct 60
Query: 69 aagttctgca 78
||||||||||
Sbjct: 61 aagttctgca 70
>27352_mdo-mir-27b:mirbase
Length = 97
Score = 83.8 bits (42), Expect = 2e-17
Identities = 71/80 (88%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 12 aggtgcagagcttagctgattggtgaacagtgattgaa---ctctttgttcacagtggct 68
|||||||||||||||| |||||||||||||| | ||| |||||||||||||||||||
Sbjct: 13 aggtgcagagcttagccgattggtgaacagtcactgatttcctctttgttcacagtggct 72
Query: 69 aagttctgcatctgaggaga 88
|||||||||| |||| ||||
Sbjct: 73 aagttctgcacctgaagaga 92
>33156_bta-mir-27b:mirbase
Length = 97
Score = 83.8 bits (42), Expect = 2e-17
Identities = 71/80 (88%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 12 aggtgcagagcttagctgattggtgaacagtgattg---aactctttgttcacagtggct 68
||||||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct: 13 aggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggct 72
Query: 69 aagttctgcatctgaggaga 88
|||||||||| |||| ||||
Sbjct: 73 aagttctgcacctgaagaga 92
>33932_ssc-mir-27b:mirbase
Length = 80
Score = 81.8 bits (41), Expect = 8e-17
Identities = 67/75 (89%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 12 aggtgcagagcttagctgattggtgaacagtgattg---aactctttgttcacagtggct 68
||||||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct: 4 aggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggct 63
Query: 69 aagttctgcatctga 83
|||||||||| ||||
Sbjct: 64 aagttctgcacctga 78
>26967_eca-mir-27b:mirbase
Length = 73
Score = 79.8 bits (40), Expect = 3e-16
Identities = 63/70 (90%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 12 aggtgcagagcttagctgattggtgaacagtgattg---aactctttgttcacagtggct 68
||||||||||||||||||||||||||||||||| || | |||||||||||||||||
Sbjct: 1 aggtgcagagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggct 60
Query: 69 aagttctgca 78
||||||||||
Sbjct: 61 aagttctgca 70
>26646_cfa-mir-27b:mirbase
Length = 63
Score = 65.9 bits (33), Expect = 5e-12
Identities = 56/63 (88%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 18 agagcttagctgattggtgaacagtgattg---aactctttgttcacagtggctaagttc 74
||||||||||||||||||||||||||| || | |||||||||||||||||||||||
Sbjct: 1 agagcttagctgattggtgaacagtgactggtttccgctttgttcacagtggctaagttc 60
Query: 75 tgc 77
|||
Sbjct: 61 tgc 63
>25450_pma-mir-27b:mirbase
Length = 75
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttctgcatctg 82
||||||||||||||||||||||||||||
Sbjct: 47 tgttcacagtggctaagttctgcatctg 74
>34240_dre-mir-27d:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 ggtgcagagcttagctgattggtgaac 39
|||||||||||| ||||||||||||||
Sbjct: 10 ggtgcagagcttggctgattggtgaac 36
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 tttgttcacagtggctaagttct 75
|||||||||||||||||||||||
Sbjct: 53 tttgttcacagtggctaagttct 75
>25449_pma-mir-27a:mirbase
Length = 75
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 ttgttcacagtggctaagttc 74
|||||||||||||||||||||
Sbjct: 47 ttgttcacagtggctaagttc 67
>34568_fru-mir-27e:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 ttgttcacagtggctaagttc 74
|||||||||||||||||||||
Sbjct: 57 ttgttcacagtggctaagttc 77
>34715_tni-mir-27e:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 54 ttgttcacagtggctaagttc 74
|||||||||||||||||||||
Sbjct: 57 ttgttcacagtggctaagttc 77
>25723_xtr-mir-27a:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>25725_xtr-mir-27c-1:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>25726_xtr-mir-27c-2:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>26645_cfa-mir-27a:mirbase
Length = 60
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 39 tgttcacagtggctaagttc 58
>26966_eca-mir-27a:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>27351_mdo-mir-27a:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttc 73
>27491_age-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>27599_sla-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>27673_mml-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>28187_mne-mir-27a:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>28273_ggo-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>28383_hsa-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>30060_ppa-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>30169_ptr-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>30774_ppy-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>31404_lca-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 49 tgttcacagtggctaagttc 68
>31444_oan-mir-27a:mirbase
Length = 85
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 51 tgttcacagtggctaagttc 70
>31797_mmu-mir-27a:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttc 73
>32680_rno-mir-27a:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 54 tgttcacagtggctaagttc 73
>33154_bta-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>33155_bta-mir-27a:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>33931_ssc-mir-27a:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 52 tgttcacagtggctaagttc 71
>34237_dre-mir-27a:mirbase
Length = 131
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 77 tgttcacagtggctaagttc 96
>34241_dre-mir-27e:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 55 tgttcacagtggctaagttc 74
||||||||||||||||||||
Sbjct: 63 tgttcacagtggctaagttc 82
