miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: BLAST

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>34567_fru-mir-27c:mirbase
          Length = 78

 Score = 56.0 bits (28), Expect = 4e-09
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 53 atgttcacagtggttaagttctgccgcc 80
          ||||||||||||||||||||||||||||
Sbjct: 51 atgttcacagtggttaagttctgccgcc 78

>34714_tni-mir-27c:mirbase
          Length = 76

 Score = 54.0 bits (27), Expect = 2e-08
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 54 tgttcacagtggttaagttctgccgcc 80
          |||||||||||||||||||||||||||
Sbjct: 50 tgttcacagtggttaagttctgccgcc 76



 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 14 caggacttaacccacttgtgaaca 37
          ||||||||||||||| ||||||||
Sbjct: 14 caggacttaacccacatgtgaaca 37

>25725_xtr-mir-27c-1:mirbase
          Length = 82

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 50 tcaatgttcacagtggttaagttc 73
          |||||||||||||||| |||||||
Sbjct: 48 tcaatgttcacagtggctaagttc 71

>25726_xtr-mir-27c-2:mirbase
          Length = 82

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 50 tcaatgttcacagtggttaagttc 73
          |||||||||||||||| |||||||
Sbjct: 48 tcaatgttcacagtggctaagttc 71