miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34717_tni-mir-29a-2:mirbase
Length = 100
Score = 73.8 bits (37), Expect = 3e-14
Identities = 68/77 (88%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 30 ccaccaaacgatgactgatttcctttggtgcttagagtc-ccatctgtcatctagcacca 88
|||||||| ||||||||||||||| |||||||||||| | || | | | ||||||||||
Sbjct: 8 ccaccaaaagatgactgatttcctctggtgcttagagccgcctgcagccttctagcacca 67
Query: 89 tttgaaatcggttataa 105
|||||||||||||||||
Sbjct: 68 tttgaaatcggttataa 84
>31446_oan-mir-29a-1:mirbase
Length = 118
Score = 65.9 bits (33), Expect = 7e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttataatgactgggga 115
|||||||||||||||||||||||||||||| ||||||
Sbjct: 68 tctagcaccatttgaaatcggttataatgattgggga 104
>25729_xtr-mir-29c:mirbase
Length = 90
Score = 63.9 bits (32), Expect = 3e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 76 tcatctagcaccatttgaaatcggttataatg 107
||||||||||||||||||||||||||||||||
Sbjct: 51 tcatctagcaccatttgaaatcggttataatg 82
>25727_xtr-mir-29a:mirbase
Length = 87
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttataatga 108
||||||||||||||||||||||||||||||
Sbjct: 51 tctagcaccatttgaaatcggttataatga 80
>25911_gga-mir-29a:mirbase
Length = 89
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttataatgactgggga 115
|||||||||||||||||||||||||| ||| ||||||
Sbjct: 53 tctagcaccatttgaaatcggttatagtgattgggga 89
>31802_mmu-mir-29a:mirbase
Length = 88
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttataatgactgggga 115
||||||||||| |||||||||||||||||| ||||||
Sbjct: 52 tctagcaccatctgaaatcggttataatgattgggga 88
>32683_rno-mir-29a:mirbase
Length = 88
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttataatgactgggga 115
||||||||||| |||||||||||||||||| ||||||
Sbjct: 52 tctagcaccatctgaaatcggttataatgattgggga 88
>33044_rno-mir-3556a:mirbase
Length = 118
Score = 58.0 bits (29), Expect = 2e-09
Identities = 35/37 (94%)
Strand = Plus / Minus
Query: 79 tctagcaccatttgaaatcggttataatgactgggga 115
||||||||||| |||||||||||||||||| ||||||
Sbjct: 49 tctagcaccatctgaaatcggttataatgattgggga 13
>34570_fru-mir-29a-2:mirbase
Length = 126
Score = 58.0 bits (29), Expect = 2e-09
Identities = 66/77 (85%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 30 ccaccaaacgatgactgatttcctttggtgcttagagtcccat-ctgtcatctagcacca 88
|||||||| ||||||||||||| | ||||||| |||||| | | | | ||||||||||
Sbjct: 32 ccaccaaaagatgactgatttcttctggtgctgagagtcggctgcagccttctagcacca 91
Query: 89 tttgaaatcggttataa 105
|||||||||||||||||
Sbjct: 92 tttgaaatcggttataa 108
>33935_ssc-mir-29a:mirbase
Length = 86
Score = 56.0 bits (28), Expect = 6e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttataatgactgggg 114
||||||||||| |||||||||||||||||| |||||
Sbjct: 51 tctagcaccatctgaaatcggttataatgattgggg 86
>34569_fru-mir-29a-1:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 3e-08
Identities = 56/63 (88%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 41 tgactgatttcctttggtgcttagagtcccat-ctgtcatctagcaccatttgaaatcgg 99
||||||||||| ||||||| | ||||||| || |||| |||||||||||||||||||||
Sbjct: 5 tgactgatttcttttggtgttcagagtccaattctgtt-tctagcaccatttgaaatcgg 63
Query: 100 tta 102
|||
Sbjct: 64 tta 66
>26417_tgu-mir-29a-1:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttata 104
||||||||||||||||||||||||||
Sbjct: 39 tctagcaccatttgaaatcggttata 64
>25914_gga-mir-29c:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
|||||||||||||||||||||||||
Sbjct: 53 tctagcaccatttgaaatcggttat 77
>26418_tgu-mir-29a-2:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
|||||||||||||||||||||||||
Sbjct: 39 tctagcaccatttgaaatcggttat 63
>26973_eca-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>26974_eca-mir-29c-2:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>27354_mdo-mir-29a:mirbase
Length = 64
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
|||||||||||||||||||||||||
Sbjct: 40 tctagcaccatttgaaatcggttat 64
>27679_mml-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>28390_hsa-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>30175_ptr-mir-29c:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>30780_ppy-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>31447_oan-mir-29a-2:mirbase
Length = 113
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
|||||||||||||||||||||||||
Sbjct: 62 tctagcaccatttgaaatcggttat 86
>31805_mmu-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>32686_rno-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>33045_rno-mir-3556b:mirbase
Length = 107
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 79 tctagcaccatttgaaatcggttat 103
|||||||||||||||||||||||||
Sbjct: 48 tctagcaccatttgaaatcggttat 24
>33161_bta-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>33937_ssc-mir-29c:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
|||||||||||||||||||||||||
Sbjct: 52 tctagcaccatttgaaatcggttat 76
>34243_dre-mir-29a-2:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 4e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttataatg 107
|||||||||||||||||||||||| ||||
Sbjct: 43 tctagcaccatttgaaatcggttacaatg 71
>26652_cfa-mir-29c-2:mirbase
Length = 58
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggtta 102
||||||||||||||||||||||||
Sbjct: 35 tctagcaccatttgaaatcggtta 58
>26651_cfa-mir-29c-1:mirbase
Length = 58
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggtta 102
||||||||||||||||||||||||
Sbjct: 35 tctagcaccatttgaaatcggtta 58
>34716_tni-mir-29a-1:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggtta 102
||||||||||||||||||||||||
Sbjct: 43 tctagcaccatttgaaatcggtta 66
>25451_pma-mir-29a:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
||||||||||||||||||| |||||
Sbjct: 48 tctagcaccatttgaaatcagttat 72
>25452_pma-mir-29b:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
|||||||||||| ||||||||||||
Sbjct: 48 tctagcaccattagaaatcggttat 72
>25728_xtr-mir-29b:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 catctagcaccatttgaaatc 97
|||||||||||||||||||||
Sbjct: 47 catctagcaccatttgaaatc 67
>26970_eca-mir-29a:mirbase
Length = 65
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
||||||||||| |||||||||||||
Sbjct: 41 tctagcaccatctgaaatcggttat 65
>27493_age-mir-29a:mirbase
Length = 64
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
||||||||||| |||||||||||||
Sbjct: 40 tctagcaccatctgaaatcggttat 64
>27553_lla-mir-29a:mirbase
Length = 64
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
||||||||||| |||||||||||||
Sbjct: 40 tctagcaccatctgaaatcggttat 64
>27601_sla-mir-29a:mirbase
Length = 64
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
||||||||||| |||||||||||||
Sbjct: 40 tctagcaccatctgaaatcggttat 64
>27676_mml-mir-29a:mirbase
Length = 64
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
||||||||||| |||||||||||||
Sbjct: 40 tctagcaccatctgaaatcggttat 64
>28189_mne-mir-29a:mirbase
Length = 64
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
||||||||||| |||||||||||||
Sbjct: 40 tctagcaccatctgaaatcggttat 64
>28275_ggo-mir-29a:mirbase
Length = 64
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
||||||||||| |||||||||||||
Sbjct: 40 tctagcaccatctgaaatcggttat 64
>28387_hsa-mir-29a:mirbase
Length = 64
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
||||||||||| |||||||||||||
Sbjct: 40 tctagcaccatctgaaatcggttat 64
>30062_ppa-mir-29a:mirbase
Length = 64
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
||||||||||| |||||||||||||
Sbjct: 40 tctagcaccatctgaaatcggttat 64
>30172_ptr-mir-29a:mirbase
Length = 64
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
||||||||||| |||||||||||||
Sbjct: 40 tctagcaccatctgaaatcggttat 64
>30777_ppy-mir-29a:mirbase
Length = 64
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
||||||||||| |||||||||||||
Sbjct: 40 tctagcaccatctgaaatcggttat 64
>33158_bta-mir-29a:mirbase
Length = 64
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
||||||||||| |||||||||||||
Sbjct: 40 tctagcaccatctgaaatcggttat 64
>33162_bta-mir-29d:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggttat 103
|||||||||||||||||||| ||||
Sbjct: 52 tctagcaccatttgaaatcgattat 76
>34244_dre-mir-29b-1:mirbase
Length = 83
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 77 catctagcaccatttgaaatc 97
|||||||||||||||||||||
Sbjct: 48 catctagcaccatttgaaatc 68
>24655_bfl-mir-29b:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 atctagcaccatttgaaatc 97
||||||||||||||||||||
Sbjct: 59 atctagcaccatttgaaatc 78
>25913_gga-mir-29b-2:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 atctagcaccatttgaaatc 97
||||||||||||||||||||
Sbjct: 48 atctagcaccatttgaaatc 67
>26420_tgu-mir-29b-2:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 atctagcaccatttgaaatc 97
||||||||||||||||||||
Sbjct: 38 atctagcaccatttgaaatc 57
>26648_cfa-mir-29a:mirbase
Length = 60
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 79 tctagcaccatttgaaatcggtta 102
||||||||||| ||||||||||||
Sbjct: 37 tctagcaccatctgaaatcggtta 60
>26650_cfa-mir-29b-2:mirbase
Length = 66
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 atctagcaccatttgaaatc 97
||||||||||||||||||||
Sbjct: 41 atctagcaccatttgaaatc 60
>26972_eca-mir-29b-2:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 atctagcaccatttgaaatc 97
||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatc 68
>27602_sla-mir-29b:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 atctagcaccatttgaaatc 97
||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatc 68
>27678_mml-mir-29b-2:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 atctagcaccatttgaaatc 97
||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatc 68
>28190_mne-mir-29b:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 atctagcaccatttgaaatc 97
||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatc 68
>28277_ggo-mir-29b-2:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 atctagcaccatttgaaatc 97
||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatc 68
>28389_hsa-mir-29b-2:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 atctagcaccatttgaaatc 97
||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatc 68
>30064_ppa-mir-29b-2:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 atctagcaccatttgaaatc 97
||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatc 68
>30174_ptr-mir-29b-2:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 atctagcaccatttgaaatc 97
||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatc 68
>30779_ppy-mir-29b-2:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 atctagcaccatttgaaatc 97
||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatc 68
>31449_oan-mir-29b-2:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 atctagcaccatttgaaatc 97
||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatc 68
>31804_mmu-mir-29b-2:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 atctagcaccatttgaaatc 97
||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatc 68
>32685_rno-mir-29b-2:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 atctagcaccatttgaaatc 97
||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatc 68
>33160_bta-mir-29b-2:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 atctagcaccatttgaaatc 97
||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatc 68
>34245_dre-mir-29b-2:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 atctagcaccatttgaaatc 97
||||||||||||||||||||
Sbjct: 53 atctagcaccatttgaaatc 72
>34572_fru-mir-29b-2:mirbase
Length = 74
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 atctagcaccatttgaaatc 97
||||||||||||||||||||
Sbjct: 42 atctagcaccatttgaaatc 61
>34719_tni-mir-29b-2:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 78 atctagcaccatttgaaatc 97
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Sbjct: 46 atctagcaccatttgaaatc 65
