miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34572_fru-mir-29b-2:mirbase
Length = 74
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtgttcttgggg 85
|||||||||||||||||||||||||||||||||
Sbjct: 42 atctagcaccatttgaaatcagtgttcttgggg 74
>34719_tni-mir-29b-2:mirbase
Length = 78
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtgttcttgggg 85
|||||||||||||||||||||||||||||||||
Sbjct: 46 atctagcaccatttgaaatcagtgttcttgggg 78
>26971_eca-mir-29b:mirbase
Length = 81
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttcttgggg 85
||||||||||||||||||||||||||||||||
Sbjct: 49 tctagcaccatttgaaatcagtgttcttgggg 80
>27494_age-mir-29b:mirbase
Length = 81
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttcttgggg 85
||||||||||||||||||||||||||||||||
Sbjct: 49 tctagcaccatttgaaatcagtgttcttgggg 80
>27554_lla-mir-29b:mirbase
Length = 81
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttcttgggg 85
||||||||||||||||||||||||||||||||
Sbjct: 49 tctagcaccatttgaaatcagtgttcttgggg 80
>27677_mml-mir-29b-1:mirbase
Length = 81
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttcttgggg 85
||||||||||||||||||||||||||||||||
Sbjct: 49 tctagcaccatttgaaatcagtgttcttgggg 80
>28276_ggo-mir-29b-1:mirbase
Length = 81
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttcttgggg 85
||||||||||||||||||||||||||||||||
Sbjct: 49 tctagcaccatttgaaatcagtgttcttgggg 80
>28388_hsa-mir-29b-1:mirbase
Length = 81
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttcttgggg 85
||||||||||||||||||||||||||||||||
Sbjct: 49 tctagcaccatttgaaatcagtgttcttgggg 80
>30063_ppa-mir-29b-1:mirbase
Length = 81
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttcttgggg 85
||||||||||||||||||||||||||||||||
Sbjct: 49 tctagcaccatttgaaatcagtgttcttgggg 80
>30173_ptr-mir-29b-1:mirbase
Length = 81
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttcttgggg 85
||||||||||||||||||||||||||||||||
Sbjct: 49 tctagcaccatttgaaatcagtgttcttgggg 80
>30778_ppy-mir-29b-1:mirbase
Length = 81
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttcttgggg 85
||||||||||||||||||||||||||||||||
Sbjct: 49 tctagcaccatttgaaatcagtgttcttgggg 80
>33159_bta-mir-29b-1:mirbase
Length = 81
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttcttgggg 85
||||||||||||||||||||||||||||||||
Sbjct: 49 tctagcaccatttgaaatcagtgttcttgggg 80
>33936_ssc-mir-29b:mirbase
Length = 81
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttcttgggg 85
||||||||||||||||||||||||||||||||
Sbjct: 49 tctagcaccatttgaaatcagtgttcttgggg 80
>34246_dre-mir-29b-3:mirbase
Length = 88
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttcttgggg 85
||||||||||||||||||||||||||||||||
Sbjct: 53 tctagcaccatttgaaatcagtgttcttgggg 84
>34718_tni-mir-29b-1:mirbase
Length = 79
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttcttgggg 85
||||||||||||||||||||||||||||||||
Sbjct: 48 tctagcaccatttgaaatcagtgttcttgggg 79
>25912_gga-mir-29b-1:mirbase
Length = 81
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttcttgg 83
||||||||||||||||||||||||||||||
Sbjct: 49 tctagcaccatttgaaatcagtgttcttgg 78
>26419_tgu-mir-29b-1:mirbase
Length = 71
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttcttgg 83
||||||||||||||||||||||||||||||
Sbjct: 39 tctagcaccatttgaaatcagtgttcttgg 68
>27355_mdo-mir-29b:mirbase
Length = 86
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttcttgg 83
||||||||||||||||||||||||||||||
Sbjct: 53 tctagcaccatttgaaatcagtgttcttgg 82
>31448_oan-mir-29b-1:mirbase
Length = 121
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttcttgg 83
||||||||||||||||||||||||||||||
Sbjct: 74 tctagcaccatttgaaatcagtgttcttgg 103
>32684_rno-mir-29b-1:mirbase
Length = 81
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttcttgg 83
||||||||||||||||||||||||||||||
Sbjct: 49 tctagcaccatttgaaatcagtgttcttgg 78
>33086_rno-mir-3587:mirbase
Length = 63
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 54 tctagcaccatttgaaatcagtgttcttgg 83
||||||||||||||||||||||||||||||
Sbjct: 60 tctagcaccatttgaaatcagtgttcttgg 31
>34571_fru-mir-29b-1:mirbase
Length = 77
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttcttgg 83
||||||||||||||||||||||||||||||
Sbjct: 48 tctagcaccatttgaaatcagtgttcttgg 77
>25728_xtr-mir-29b:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtgttct 80
||||||||||||||||||||||||||||
Sbjct: 48 atctagcaccatttgaaatcagtgttct 75
>25913_gga-mir-29b-2:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtgttct 80
||||||||||||||||||||||||||||
Sbjct: 48 atctagcaccatttgaaatcagtgttct 75
>26420_tgu-mir-29b-2:mirbase
Length = 71
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtgttct 80
||||||||||||||||||||||||||||
Sbjct: 38 atctagcaccatttgaaatcagtgttct 65
>34244_dre-mir-29b-1:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtgttcttggg 84
||||||||||||||||||||||||||| ||||
Sbjct: 49 atctagcaccatttgaaatcagtgttcctggg 80
>31803_mmu-mir-29b-1:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttct 80
|||||||||||||||||||||||||||
Sbjct: 45 tctagcaccatttgaaatcagtgttct 71
>26650_cfa-mir-29b-2:mirbase
Length = 66
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtgtt 78
||||||||||||||||||||||||||
Sbjct: 41 atctagcaccatttgaaatcagtgtt 66
>26972_eca-mir-29b-2:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtgtt 78
||||||||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatcagtgtt 74
>27602_sla-mir-29b:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtgtt 78
||||||||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatcagtgtt 74
>27678_mml-mir-29b-2:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtgtt 78
||||||||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatcagtgtt 74
>28190_mne-mir-29b:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtgtt 78
||||||||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatcagtgtt 74
>28277_ggo-mir-29b-2:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtgtt 78
||||||||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatcagtgtt 74
>28389_hsa-mir-29b-2:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtgtt 78
||||||||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatcagtgtt 74
>30064_ppa-mir-29b-2:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtgtt 78
||||||||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatcagtgtt 74
>30174_ptr-mir-29b-2:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtgtt 78
||||||||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatcagtgtt 74
>30779_ppy-mir-29b-2:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtgtt 78
||||||||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatcagtgtt 74
>31449_oan-mir-29b-2:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtgtt 78
||||||||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatcagtgtt 74
>31804_mmu-mir-29b-2:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtgtt 78
||||||||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatcagtgtt 74
>32685_rno-mir-29b-2:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtgtt 78
||||||||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatcagtgtt 74
>33160_bta-mir-29b-2:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtgtt 78
||||||||||||||||||||||||||
Sbjct: 49 atctagcaccatttgaaatcagtgtt 74
>34868_sko-mir-29b:mirbase
Length = 96
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttc 79
||||||||||||||||||||||||||
Sbjct: 59 tctagcaccatttgaaatcagtgttc 84
>25453_pma-mir-29c:mirbase
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgtt 78
|||||||||||||||||||||||||
Sbjct: 53 tctagcaccatttgaaatcagtgtt 77
>26649_cfa-mir-29b-1:mirbase
Length = 65
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgtt 78
|||||||||||||||||||||||||
Sbjct: 41 tctagcaccatttgaaatcagtgtt 65
>24655_bfl-mir-29b:mirbase
Length = 95
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtg 76
||||||||||||||||||||||||
Sbjct: 59 atctagcaccatttgaaatcagtg 82
>38735_cte-mir-29a:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgttcttggg 84
|||||||||||||||||||||| ||| ||||
Sbjct: 59 tctagcaccatttgaaatcagttttcctggg 89
>38855_lgi-mir-29:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagt 75
||||||||||||||||||||||
Sbjct: 59 tctagcaccatttgaaatcagt 80
>25451_pma-mir-29a:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagt 75
||||||||||||||||||||||
Sbjct: 48 tctagcaccatttgaaatcagt 69
>33163_bta-mir-29e:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatcagtgtt 78
|||||||| |||||||||||||||||
Sbjct: 49 atctagcatcatttgaaatcagtgtt 74
>38736_cte-mir-29b:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 tagcaccatttgaaatcagtg 76
|||||||||||||||||||||
Sbjct: 61 tagcaccatttgaaatcagtg 81
>35355_ame-mir-29b:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ctagcaccatttgaaatcagt 75
|||||||||||||||||||||
Sbjct: 66 ctagcaccatttgaaatcagt 86
>37574_ngi-mir-29b:mirbase
Length = 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ctagcaccatttgaaatcagt 75
|||||||||||||||||||||
Sbjct: 60 ctagcaccatttgaaatcagt 80
>37642_nvi-mir-29b:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 55 ctagcaccatttgaaatcagt 75
|||||||||||||||||||||
Sbjct: 65 ctagcaccatttgaaatcagt 85
>25729_xtr-mir-29c:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatc 72
||||||||||||||||||||
Sbjct: 53 atctagcaccatttgaaatc 72
>25730_xtr-mir-29d:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 54 tctagcaccatttgaaatcagtgt 77
||||||||||| ||||||||||||
Sbjct: 47 tctagcaccatatgaaatcagtgt 70
>34242_dre-mir-29a-1:mirbase
Length = 126
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 53 atctagcaccatttgaaatc 72
||||||||||||||||||||
Sbjct: 78 atctagcaccatttgaaatc 97
