miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31810_mmu-mir-30d:mirbase
Length = 82
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 agctttcagtctgatgtttgctgctactgg 84
||||||||||| ||||||||||||||||||
Sbjct: 50 agctttcagtcagatgtttgctgctactgg 79
>32692_rno-mir-30d:mirbase
Length = 82
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 agctttcagtctgatgtttgctgctactgg 84
||||||||||| ||||||||||||||||||
Sbjct: 50 agctttcagtcagatgtttgctgctactgg 79
>27685_mml-mir-30d:mirbase
Length = 69
Score = 48.1 bits (24), Expect = 1e-06
Identities = 59/70 (84%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 12 gttgtaaacattcccgactggaagttgtaatgcagaaaatctcagctttcagtctgatgt 71
||||||||||| |||||||||||| ||||| || | || ||||||||||| |||||
Sbjct: 3 gttgtaaacatccccgactggaagctgtaagacacag---ctaagctttcagtcagatgt 59
Query: 72 ttgctgctac 81
||||||||||
Sbjct: 60 ttgctgctac 69
>28193_mne-mir-30d:mirbase
Length = 70
Score = 48.1 bits (24), Expect = 1e-06
Identities = 59/70 (84%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 12 gttgtaaacattcccgactggaagttgtaatgcagaaaatctcagctttcagtctgatgt 71
||||||||||| |||||||||||| ||||| || | || ||||||||||| |||||
Sbjct: 4 gttgtaaacatccccgactggaagctgtaagacacag---ctaagctttcagtcagatgt 60
Query: 72 ttgctgctac 81
||||||||||
Sbjct: 61 ttgctgctac 70
>28281_ggo-mir-30d:mirbase
Length = 70
Score = 48.1 bits (24), Expect = 1e-06
Identities = 59/70 (84%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 12 gttgtaaacattcccgactggaagttgtaatgcagaaaatctcagctttcagtctgatgt 71
||||||||||| |||||||||||| ||||| || | || ||||||||||| |||||
Sbjct: 4 gttgtaaacatccccgactggaagctgtaagacacag---ctaagctttcagtcagatgt 60
Query: 72 ttgctgctac 81
||||||||||
Sbjct: 61 ttgctgctac 70
>28395_hsa-mir-30d:mirbase
Length = 70
Score = 48.1 bits (24), Expect = 1e-06
Identities = 59/70 (84%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 12 gttgtaaacattcccgactggaagttgtaatgcagaaaatctcagctttcagtctgatgt 71
||||||||||| |||||||||||| ||||| || | || ||||||||||| |||||
Sbjct: 4 gttgtaaacatccccgactggaagctgtaagacacag---ctaagctttcagtcagatgt 60
Query: 72 ttgctgctac 81
||||||||||
Sbjct: 61 ttgctgctac 70
>30068_ppa-mir-30d:mirbase
Length = 70
Score = 48.1 bits (24), Expect = 1e-06
Identities = 59/70 (84%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 12 gttgtaaacattcccgactggaagttgtaatgcagaaaatctcagctttcagtctgatgt 71
||||||||||| |||||||||||| ||||| || | || ||||||||||| |||||
Sbjct: 4 gttgtaaacatccccgactggaagctgtaagacacag---ctaagctttcagtcagatgt 60
Query: 72 ttgctgctac 81
||||||||||
Sbjct: 61 ttgctgctac 70
>30181_ptr-mir-30d:mirbase
Length = 70
Score = 48.1 bits (24), Expect = 1e-06
Identities = 59/70 (84%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 12 gttgtaaacattcccgactggaagttgtaatgcagaaaatctcagctttcagtctgatgt 71
||||||||||| |||||||||||| ||||| || | || ||||||||||| |||||
Sbjct: 4 gttgtaaacatccccgactggaagctgtaagacacag---ctaagctttcagtcagatgt 60
Query: 72 ttgctgctac 81
||||||||||
Sbjct: 61 ttgctgctac 70
>30785_ppy-mir-30d:mirbase
Length = 70
Score = 48.1 bits (24), Expect = 1e-06
Identities = 59/70 (84%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 12 gttgtaaacattcccgactggaagttgtaatgcagaaaatctcagctttcagtctgatgt 71
||||||||||| |||||||||||| ||||| || | || ||||||||||| |||||
Sbjct: 4 gttgtaaacatccccgactggaagctgtaagacacag---ctaagctttcagtcagatgt 60
Query: 72 ttgctgctac 81
||||||||||
Sbjct: 61 ttgctgctac 70
>25736_xtr-mir-30d:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 agctttcagtctgatgtttgctgctac 81
||||||||||||| |||||||||||||
Sbjct: 50 agctttcagtctggtgtttgctgctac 76
>33168_bta-mir-30d:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 55 agctttcagtctgatgtttgctgctac 81
||||||||||| |||||||||||||||
Sbjct: 44 agctttcagtcagatgtttgctgctac 70
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 12 gttgtaaacattcccgactggaagttgta 40
||||||||||| |||||||||||| ||||
Sbjct: 4 gttgtaaacatccccgactggaagctgta 32
>33944_ssc-mir-30d:mirbase
Length = 79
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 12 gttgtaaacattcccgactggaagttgtaa 41
||||||||||| |||||||||||| |||||
Sbjct: 6 gttgtaaacatccccgactggaagctgtaa 35
>26427_tgu-mir-30d:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 cagctttcagtctgatgtttgctgc 78
|||||||||||| ||||||||||||
Sbjct: 37 cagctttcagtcagatgtttgctgc 61
>26428_tgu-mir-30d:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 54 cagctttcagtctgatgtttgctgc 78
|||||||||||| ||||||||||||
Sbjct: 37 cagctttcagtcagatgtttgctgc 61
>25920_gga-mir-30d:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 agctttcagtctgatgtttgctgc 78
||||||||||| ||||||||||||
Sbjct: 41 agctttcagtcagatgtttgctgc 64
>26657_cfa-mir-30d:mirbase
Length = 60
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 agctttcagtctgatgtttgctgc 78
||||||||||| ||||||||||||
Sbjct: 37 agctttcagtcagatgtttgctgc 60
>26978_eca-mir-30d:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 gttgtaaacattcccgactggaag 35
||||||||||| ||||||||||||
Sbjct: 5 gttgtaaacatccccgactggaag 28
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 55 agctttcagtctgatgtttgctgc 78
||||||||||| ||||||||||||
Sbjct: 45 agctttcagtcagatgtttgctgc 68
>31453_oan-mir-30d:mirbase
Length = 132
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 14 tgtaaacattcccgactggaagttgtaa 41
||||||||| |||||||||||| |||||
Sbjct: 29 tgtaaacatccccgactggaagctgtaa 56
