miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34721_tni-mir-30c:mirbase
Length = 79
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 2 ttcagggagtgtaaacatcctacactctc 30
|||||||||||||||||||||||||||||
Sbjct: 1 ttcagggagtgtaaacatcctacactctc 29
>25918_gga-mir-30c-1:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactctcagctg 35
||||||||||||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactctcagctg 41
>26976_eca-mir-30c:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactctcagctg 35
||||||||||||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactctcagctg 41
>27683_mml-mir-30c-1:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactctcagctg 35
||||||||||||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactctcagctg 41
>28393_hsa-mir-30c-1:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactctcagctg 35
||||||||||||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactctcagctg 41
>30179_ptr-mir-30c-1:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactctcagctg 35
||||||||||||||||||||||||||
Sbjct: 15 gtgtaaacatcctacactctcagctg 40
>30784_ppy-mir-30c-1:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactctcagctg 35
||||||||||||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactctcagctg 41
>31808_mmu-mir-30c-1:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactctcagctg 35
||||||||||||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactctcagctg 41
>32690_rno-mir-30c-1:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactctcagctg 35
||||||||||||||||||||||||||
Sbjct: 16 gtgtaaacatcctacactctcagctg 41
>33167_bta-mir-30c:mirbase
Length = 105
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactctcagctg 35
||||||||||||||||||||||||||
Sbjct: 25 gtgtaaacatcctacactctcagctg 50
>33942_ssc-mir-30c-1:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactctcagctg 35
||||||||||||||||||||||||||
Sbjct: 9 gtgtaaacatcctacactctcagctg 34
>25734_xtr-mir-30c-1:mirbase
Length = 89
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactctcagctg 35
|||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctg 41
>25735_xtr-mir-30c-2:mirbase
Length = 78
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactctcagctg 35
|||||||||||||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctg 38
>25919_gga-mir-30c-2:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactctcagctg 35
|||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctg 31
>26425_tgu-mir-30c:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactctcagctg 35
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctg 25
>26426_tgu-mir-30c:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactctcagctg 35
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctg 25
>26655_cfa-mir-30c-1:mirbase
Length = 61
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactctcagctg 35
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctg 25
>26656_cfa-mir-30c-2:mirbase
Length = 62
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactctcagctg 35
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctg 25
>26977_eca-mir-30c-2:mirbase
Length = 60
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactctcagctg 35
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctg 25
>27556_lla-mir-30c:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactctcagctg 35
|||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctg 31
>27684_mml-mir-30c-2:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactctcagctg 35
|||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctg 31
>28192_mne-mir-30c:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactctcagctg 35
|||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctg 31
>28394_hsa-mir-30c-2:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactctcagctg 35
|||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctg 31
>30180_ptr-mir-30c-2:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactctcagctg 35
|||||||||||||||||||||||||
Sbjct: 7 tgtaaacatcctacactctcagctg 31
>31452_oan-mir-30c:mirbase
Length = 122
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactctcagctg 35
|||||||||||||||||||||||||
Sbjct: 31 tgtaaacatcctacactctcagctg 55
>31809_mmu-mir-30c-2:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactctcagctg 35
|||||||||||||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctg 38
>32691_rno-mir-30c-2:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactctcagctg 35
|||||||||||||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctg 38
>33943_ssc-mir-30c-2:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactctcagctg 35
|||||||||||||||||||||||||
Sbjct: 10 tgtaaacatcctacactctcagctg 34
>25461_pma-mir-30f-2:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 4 cagggagtgtaaacatcctacactctcagctg 35
|||| |||||||||| ||||||||||||||||
Sbjct: 4 caggcagtgtaaacaccctacactctcagctg 35
>34574_fru-mir-30c:mirbase
Length = 78
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 3 tcagggagtgtaaacatcctacactctc 30
||||| ||||||||||||||||||||||
Sbjct: 1 tcaggaagtgtaaacatcctacactctc 28
>25462_pma-mir-30g:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactctcagctg 35
||||||||||||| ||||||||||||
Sbjct: 11 gtgtaaacatccttcactctcagctg 36
>25460_pma-mir-30f-1:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactctcagctg 35
|||||||| ||||||||||||||||
Sbjct: 10 tgtaaacaccctacactctcagctg 34
>33170_bta-mir-30f:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 11 tgtaaacatcctacactctcagctg 35
|||||||| ||||||||||||||||
Sbjct: 14 tgtaaacaccctacactctcagctg 38
>33940_ssc-mir-30b:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactc 28
|||||||||||||||||||
Sbjct: 10 gtgtaaacatcctacactc 28
>33941_ssc-mir-30b:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactc 28
|||||||||||||||||||
Sbjct: 10 gtgtaaacatcctacactc 28
>34573_fru-mir-30b:mirbase
Length = 90
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactc 28
|||||||||||||||||||
Sbjct: 15 gtgtaaacatcctacactc 33
>34720_tni-mir-30b:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 9e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 10 gtgtaaacatcctacactc 28
|||||||||||||||||||
Sbjct: 6 gtgtaaacatcctacactc 24
