miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25736_xtr-mir-30d:mirbase
Length = 81
Score = 56.0 bits (28), Expect = 6e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
||||||||||||||||||||||||||||
Sbjct: 10 ctgtaaacatccccgactggaagctgtg 37
>33938_ssc-mir-30a:mirbase
Length = 107
Score = 56.0 bits (28), Expect = 6e-09
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtgctacgcggaaaacgagctttcagttggatgtt 93
|||||||||||| ||||||||||||||| | || ||| ||| ||||||||| |||||||
Sbjct: 20 ctgtaaacatcctcgactggaagctgtg--aggctgaagacgggctttcagtcggatgtt 77
Query: 94 tgc 96
|||
Sbjct: 78 tgc 80
>33939_ssc-mir-30a:mirbase
Length = 107
Score = 56.0 bits (28), Expect = 6e-09
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtgctacgcggaaaacgagctttcagttggatgtt 93
|||||||||||| ||||||||||||||| | || ||| ||| ||||||||| |||||||
Sbjct: 20 ctgtaaacatcctcgactggaagctgtg--aggctgaagacgggctttcagtcggatgtt 77
Query: 94 tgc 96
|||
Sbjct: 78 tgc 80
>25920_gga-mir-30d:mirbase
Length = 64
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgt 60
|||||||||||||||||||||||||||
Sbjct: 5 ctgtaaacatccccgactggaagctgt 31
>26427_tgu-mir-30d:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgt 60
|||||||||||||||||||||||||||
Sbjct: 2 ctgtaaacatccccgactggaagctgt 28
>26428_tgu-mir-30d:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgt 60
|||||||||||||||||||||||||||
Sbjct: 2 ctgtaaacatccccgactggaagctgt 28
>26978_eca-mir-30d:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 35 tgtaaacatccccgactggaagctgtg 61
|||||||||||||||||||||||||||
Sbjct: 7 tgtaaacatccccgactggaagctgtg 33
>31453_oan-mir-30d:mirbase
Length = 132
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgt 60
|||||||||||||||||||||||||||
Sbjct: 28 ctgtaaacatccccgactggaagctgt 54
>31810_mmu-mir-30d:mirbase
Length = 82
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgt 60
|||||||||||||||||||||||||||
Sbjct: 11 ctgtaaacatccccgactggaagctgt 37
>32692_rno-mir-30d:mirbase
Length = 82
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgt 60
|||||||||||||||||||||||||||
Sbjct: 11 ctgtaaacatccccgactggaagctgt 37
>34575_fru-mir-30d:mirbase
Length = 98
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgt 60
|||||||||||||||||||||||||||
Sbjct: 20 ctgtaaacatccccgactggaagctgt 46
>34722_tni-mir-30d:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgt 60
|||||||||||||||||||||||||||
Sbjct: 14 ctgtaaacatccccgactggaagctgt 40
>27685_mml-mir-30d:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 35 tgtaaacatccccgactggaagctgt 60
||||||||||||||||||||||||||
Sbjct: 5 tgtaaacatccccgactggaagctgt 30
>28193_mne-mir-30d:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 35 tgtaaacatccccgactggaagctgt 60
||||||||||||||||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctgt 31
>28281_ggo-mir-30d:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 35 tgtaaacatccccgactggaagctgt 60
||||||||||||||||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctgt 31
>28395_hsa-mir-30d:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 35 tgtaaacatccccgactggaagctgt 60
||||||||||||||||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctgt 31
>30068_ppa-mir-30d:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 35 tgtaaacatccccgactggaagctgt 60
||||||||||||||||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctgt 31
>30181_ptr-mir-30d:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 35 tgtaaacatccccgactggaagctgt 60
||||||||||||||||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctgt 31
>30785_ppy-mir-30d:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 35 tgtaaacatccccgactggaagctgt 60
||||||||||||||||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctgt 31
>33168_bta-mir-30d:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 35 tgtaaacatccccgactggaagctgt 60
||||||||||||||||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctgt 31
>33944_ssc-mir-30d:mirbase
Length = 79
Score = 52.0 bits (26), Expect = 1e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 35 tgtaaacatccccgactggaagctgt 60
||||||||||||||||||||||||||
Sbjct: 8 tgtaaacatccccgactggaagctgt 33
>26657_cfa-mir-30d:mirbase
Length = 60
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 35 tgtaaacatccccgactggaagctg 59
|||||||||||||||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctg 25
>25731_xtr-mir-30a:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgtg 32
>25732_xtr-mir-30a:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgtg 32
>25915_gga-mir-30a:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgtg 32
>25916_gga-mir-30a:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgtg 32
>26423_tgu-mir-30b:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 10 ctgtaaacatcctcgactggaagctgtg 37
>26424_tgu-mir-30b:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 10 ctgtaaacatcctcgactggaagctgtg 37
>27356_mdo-mir-30a:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgtg 32
>27680_mml-mir-30a:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgtg 32
>27681_mml-mir-30a:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgtg 32
>28278_ggo-mir-30a:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgtg 32
>28279_ggo-mir-30a:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgtg 32
>28391_hsa-mir-30a:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgtg 32
>30066_ppa-mir-30a:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgtg 32
>30065_ppa-mir-30a:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgtg 32
>30176_ptr-mir-30a:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgtg 32
>30177_ptr-mir-30a:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgtg 32
>30781_ppy-mir-30a:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgtg 32
>30782_ppy-mir-30a:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgtg 32
>31450_oan-mir-30a:mirbase
Length = 137
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 30 ctgtaaacatcctcgactggaagctgtg 57
>31806_mmu-mir-30a:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgtg 32
>32687_rno-mir-30a:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgtg 32
>33164_bta-mir-30a:mirbase
Length = 67
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| |||||||||||||||
Sbjct: 1 ctgtaaacatcctcgactggaagctgtg 28
>26653_cfa-mir-30a:mirbase
Length = 63
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 35 tgtaaacatccccgactggaagctgtg 61
||||||||||| |||||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgtg 27
>25456_pma-mir-30b:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctg 59
||||||||||||| ||||||||||||
Sbjct: 16 ctgtaaacatccctgactggaagctg 41
>25457_pma-mir-30c:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtgct 63
|||||||||||| |||||| ||||||||||
Sbjct: 12 ctgtaaacatcctcgactgaaagctgtgct 41
>25458_pma-mir-30d:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctg 59
|||||||||||| |||||||||||||
Sbjct: 11 ctgtaaacatccacgactggaagctg 36
>25455_pma-mir-30a:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagc 57
|||||||||||| |||||||||||
Sbjct: 8 ctgtaaacatcctcgactggaagc 31
>25737_xtr-mir-30e:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| ||||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctgtg 43
>25921_gga-mir-30e:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| ||||||||||||||
Sbjct: 18 ctgtaaacatccttgactggaagctgtg 45
>33945_ssc-mir-30e:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| ||||||||||||||
Sbjct: 8 ctgtaaacatccttgactggaagctgtg 35
>33946_ssc-mir-30e:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 4e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 34 ctgtaaacatccccgactggaagctgtg 61
|||||||||||| ||||||||||||||
Sbjct: 8 ctgtaaacatccttgactggaagctgtg 35
