miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25926_gga-mir-34b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 5 ttggtctgtaggcagtgttgttagctgattgt 36
||||| || ||||||||| |||||||||||||
Sbjct: 5 ttggtttgcaggcagtgtagttagctgattgt 36
>26434_tgu-mir-34c-1:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 5 ttggtctgtaggcagtgttgttagctgattgt 36
||||| || ||||||||| |||||||||||||
Sbjct: 2 ttggtttgcaggcagtgtagttagctgattgt 33
>26435_tgu-mir-34c-2:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 5 ttggtctgtaggcagtgttgttagctgattgt 36
||||| || ||||||||| |||||||||||||
Sbjct: 2 ttggtttgcaggcagtgtagttagctgattgt 33
>32078_mmu-mir-449b:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 12 gtaggcagtgttgttagctg 31
||||||||||||||||||||
Sbjct: 9 gtaggcagtgttgttagctg 28
>25743_xtr-mir-34b-1:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 14 aggcagtgttgttagctgattgt 36
||||||||| |||||||||||||
Sbjct: 13 aggcagtgtagttagctgattgt 35
>25744_xtr-mir-34b-2:mirbase
Length = 67
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 14 aggcagtgttgttagctgattgt 36
||||||||| |||||||||||||
Sbjct: 4 aggcagtgtagttagctgattgt 26
>25745_xtr-mir-34b-3:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 14 aggcagtgttgttagctgattgt 36
||||||||| |||||||||||||
Sbjct: 13 aggcagtgtagttagctgattgt 35
>25746_xtr-mir-34b-4:mirbase
Length = 67
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 14 aggcagtgttgttagctgattgt 36
||||||||| |||||||||||||
Sbjct: 4 aggcagtgtagttagctgattgt 26
>26987_eca-mir-34c:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgttgttagctgattg 35
|||||||||| ||||||||||||
Sbjct: 12 taggcagtgtagttagctgattg 34
>28403_hsa-mir-34c:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgttgttagctgattg 35
|||||||||| ||||||||||||
Sbjct: 12 taggcagtgtagttagctgattg 34
>28404_hsa-mir-34c:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgttgttagctgattg 35
|||||||||| ||||||||||||
Sbjct: 12 taggcagtgtagttagctgattg 34
>30189_ptr-mir-34c:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgttgttagctgattg 35
|||||||||| ||||||||||||
Sbjct: 11 taggcagtgtagttagctgattg 33
>30793_ppy-mir-34c:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgttgttagctgattg 35
|||||||||| ||||||||||||
Sbjct: 12 taggcagtgtagttagctgattg 34
>30794_ppy-mir-34c:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgttgttagctgattg 35
|||||||||| ||||||||||||
Sbjct: 12 taggcagtgtagttagctgattg 34
>31462_oan-mir-34:mirbase
Length = 90
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgttgttagctgattg 35
|||||||||| ||||||||||||
Sbjct: 20 taggcagtgtagttagctgattg 42
>31818_mmu-mir-34c:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgttgttagctgattg 35
|||||||||| ||||||||||||
Sbjct: 12 taggcagtgtagttagctgattg 34
>32699_rno-mir-34c:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgttgttagctgattg 35
|||||||||| ||||||||||||
Sbjct: 12 taggcagtgtagttagctgattg 34
>33177_bta-mir-34c:mirbase
Length = 77
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgttgttagctgattg 35
|||||||||| ||||||||||||
Sbjct: 12 taggcagtgtagttagctgattg 34
>33949_ssc-mir-34c:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 taggcagtgttgttagctgattg 35
|||||||||| ||||||||||||
Sbjct: 12 taggcagtgtagttagctgattg 34
