miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34578_fru-mir-96:mirbase
Length = 102
Score = 69.9 bits (35), Expect = 4e-13
Identities = 44/47 (93%)
Strand = Plus / Plus
Query: 55 tataccttgagcaattatgtgtagtgccaatatgggacaagacagac 101
||||| ||||||||||||||||||||||||||| ||| |||||||||
Sbjct: 47 tatactttgagcaattatgtgtagtgccaatataggagaagacagac 93
>34725_tni-mir-96:mirbase
Length = 78
Score = 63.9 bits (32), Expect = 3e-11
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 52 atatataccttgagcaattatgtgtagtgccaatat 87
|||||||| |||||||||||||||||||||||||||
Sbjct: 37 atatatactttgagcaattatgtgtagtgccaatat 72
>25752_xtr-mir-96:mirbase
Length = 75
Score = 60.0 bits (30), Expect = 4e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 54 atataccttgagcaattatgtgtagtgccaatat 87
|||||| |||||||||||||||||||||||||||
Sbjct: 38 atatactttgagcaattatgtgtagtgccaatat 71
>27363_mdo-mir-96:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 62 tgagcaattatgtgtagtgccaatatggga 91
|||||||| |||||||||||||||||||||
Sbjct: 57 tgagcaatcatgtgtagtgccaatatggga 86
>31468_oan-mir-96:mirbase
Length = 109
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 62 tgagcaattatgtgtagtgccaatatggga 91
|||||||| |||||||||||||||||||||
Sbjct: 62 tgagcaatcatgtgtagtgccaatatggga 91
>31823_mmu-mir-96:mirbase
Length = 106
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 62 tgagcaattatgtgtagtgccaatatggga 91
|||||||| |||||||||||||||||||||
Sbjct: 62 tgagcaatcatgtgtagtgccaatatggga 91
>26671_cfa-mir-96:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 tgagcaattatgtgtagtgccaatatggga 91
|||||||| ||||| |||||||||||||||
Sbjct: 52 tgagcaatcatgtgcagtgccaatatggga 81
>26993_eca-mir-96:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 tgagcaattatgtgtagtgccaatatggga 91
|||||||| ||||| |||||||||||||||
Sbjct: 47 tgagcaatcatgtgcagtgccaatatggga 76
>27609_sla-mir-96:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 tgagcaattatgtgtagtgccaatatggga 91
|||||||| ||||| |||||||||||||||
Sbjct: 45 tgagcaatcatgtgcagtgccaatatggga 74
>27700_mml-mir-96:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 tgagcaattatgtgtagtgccaatatggga 91
|||||||| ||||| |||||||||||||||
Sbjct: 47 tgagcaatcatgtgcagtgccaatatggga 76
>28200_mne-mir-96:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 tgagcaattatgtgtagtgccaatatggga 91
|||||||| ||||| |||||||||||||||
Sbjct: 47 tgagcaatcatgtgcagtgccaatatggga 76
>28290_ggo-mir-96:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 tgagcaattatgtgtagtgccaatatggga 91
|||||||| ||||| |||||||||||||||
Sbjct: 47 tgagcaatcatgtgcagtgccaatatggga 76
>28410_hsa-mir-96:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 tgagcaattatgtgtagtgccaatatggga 91
|||||||| ||||| |||||||||||||||
Sbjct: 47 tgagcaatcatgtgcagtgccaatatggga 76
>30077_ppa-mir-96:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 tgagcaattatgtgtagtgccaatatggga 91
|||||||| ||||| |||||||||||||||
Sbjct: 47 tgagcaatcatgtgcagtgccaatatggga 76
>30194_ptr-mir-96:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 tgagcaattatgtgtagtgccaatatggga 91
|||||||| ||||| |||||||||||||||
Sbjct: 47 tgagcaatcatgtgcagtgccaatatggga 76
>30800_ppy-mir-96:mirbase
Length = 78
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 tgagcaattatgtgtagtgccaatatggga 91
|||||||| ||||| |||||||||||||||
Sbjct: 47 tgagcaatcatgtgcagtgccaatatggga 76
>32704_rno-mir-96:mirbase
Length = 106
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 tgagcaattatgtgtagtgccaatatggga 91
|||||||| ||||| |||||||||||||||
Sbjct: 62 tgagcaatcatgtgcagtgccaatatggga 91
>33183_bta-mir-96:mirbase
Length = 103
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 62 tgagcaattatgtgtagtgccaatatggga 91
|||||||| ||||| |||||||||||||||
Sbjct: 62 tgagcaatcatgtgcagtgccaatatggga 91
>25467_pma-mir-96a:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 62 tgagcaattatgtgtagtgcc 82
|||||||||||||||||||||
Sbjct: 48 tgagcaattatgtgtagtgcc 68
