miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34261_dre-mir-99-1:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 2e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 cacttgtcacaaacccgtagatccgatcttgtg 33
||||||||| ||||||||||||||||||||||
Sbjct: 3 cacttgtcattaacccgtagatccgatcttgtg 35
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 49 caagctcgattctgtgggtctctgtcactgtg 80
||||||||||||| |||||||||||| |||||
Sbjct: 51 caagctcgattctatgggtctctgtctctgtg 82
>25754_xtr-mir-99:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtgg 34
||||||||||||||||||||||||
Sbjct: 7 aaacccgtagatccgatcttgtgg 30
>26995_eca-mir-99a-2:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtgg 34
||||||||||||||||||||||||
Sbjct: 12 aaacccgtagatccgatcttgtgg 35
>27562_lla-mir-99a:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtgg 34
||||||||||||||||||||||||
Sbjct: 12 aaacccgtagatccgatcttgtgg 35
>27702_mml-mir-99a:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtgg 34
||||||||||||||||||||||||
Sbjct: 12 aaacccgtagatccgatcttgtgg 35
>28201_mne-mir-99a:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtgg 34
||||||||||||||||||||||||
Sbjct: 12 aaacccgtagatccgatcttgtgg 35
>28292_ggo-mir-99a:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtgg 34
||||||||||||||||||||||||
Sbjct: 12 aaacccgtagatccgatcttgtgg 35
>28412_hsa-mir-99a:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtgg 34
||||||||||||||||||||||||
Sbjct: 12 aaacccgtagatccgatcttgtgg 35
>30079_ppa-mir-99a:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtgg 34
||||||||||||||||||||||||
Sbjct: 12 aaacccgtagatccgatcttgtgg 35
>30196_ptr-mir-99a:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtgg 34
||||||||||||||||||||||||
Sbjct: 12 aaacccgtagatccgatcttgtgg 35
>30802_ppy-mir-99a:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtgg 34
||||||||||||||||||||||||
Sbjct: 12 aaacccgtagatccgatcttgtgg 35
>31470_oan-mir-99:mirbase
Length = 102
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtgg 34
||||||||||||||||||||||||
Sbjct: 23 aaacccgtagatccgatcttgtgg 46
>31825_mmu-mir-99a:mirbase
Length = 65
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtgg 34
||||||||||||||||||||||||
Sbjct: 4 aaacccgtagatccgatcttgtgg 27
>32706_rno-mir-99a:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtgg 34
||||||||||||||||||||||||
Sbjct: 12 aaacccgtagatccgatcttgtgg 35
>33185_bta-mir-99a:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtgg 34
||||||||||||||||||||||||
Sbjct: 12 aaacccgtagatccgatcttgtgg 35
>33956_ssc-mir-99a:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtgg 34
||||||||||||||||||||||||
Sbjct: 11 aaacccgtagatccgatcttgtgg 34
>25468_pma-mir-100a:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 13 cacaaacccgtagatccgaacttgtgg 39
>25470_pma-mir-100c:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 74 cacaaacccgtagatccgaacttgtgg 48
>25929_gga-mir-99a:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtg 33
|||||||||||||||||||||||
Sbjct: 12 aaacccgtagatccgatcttgtg 34
>25930_gga-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 9 cacaaacccgtagatccgaacttgtgg 35
>26439_tgu-mir-99-2:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtg 33
|||||||||||||||||||||||
Sbjct: 10 aaacccgtagatccgatcttgtg 32
>26438_tgu-mir-99-1:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtg 33
|||||||||||||||||||||||
Sbjct: 10 aaacccgtagatccgatcttgtg 32
>26674_cfa-mir-99a-2:mirbase
Length = 57
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtgg 34
|||||||||||||||||||||||
Sbjct: 1 aacccgtagatccgatcttgtgg 23
>26673_cfa-mir-99a-1:mirbase
Length = 59
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtgg 34
|||||||||||||||||||||||
Sbjct: 1 aacccgtagatccgatcttgtgg 23
>27364_mdo-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 9 cacaaacccgtagatccgaacttgtgg 35
>27501_age-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 9 cacaaacccgtagatccgaacttgtgg 35
>27563_lla-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 9 cacaaacccgtagatccgaacttgtgg 35
>27610_sla-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 9 cacaaacccgtagatccgaacttgtgg 35
>27704_mml-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 9 cacaaacccgtagatccgaacttgtgg 35
>28293_ggo-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 9 cacaaacccgtagatccgaacttgtgg 35
>28414_hsa-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 9 cacaaacccgtagatccgaacttgtgg 35
>30080_ppa-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 9 cacaaacccgtagatccgaacttgtgg 35
>30198_ptr-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 9 cacaaacccgtagatccgaacttgtgg 35
>30803_ppy-mir-100:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 9 cacaaacccgtagatccgaacttgtgg 35
>31471_oan-mir-100:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 10 cacaaacccgtagatccgaacttgtgg 36
>33187_bta-mir-100:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 9 cacaaacccgtagatccgaacttgtgg 35
>34263_dre-mir-100-1:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 20 cacaaacccgtagatccgaacttgtgg 46
>34264_dre-mir-100-2:mirbase
Length = 75
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 7 cacaaacccgtagatccgaacttgtgg 33
>34579_fru-mir-100:mirbase
Length = 63
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 1 cacaaacccgtagatccgaacttgtgg 27
>34726_tni-mir-100:mirbase
Length = 63
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtgg 34
||||||||||||||||||| |||||||
Sbjct: 1 cacaaacccgtagatccgaacttgtgg 27
>26440_tgu-mir-100-1:mirbase
Length = 111
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtg 33
||||||||||||||||||| ||||||
Sbjct: 7 cacaaacccgtagatccgaacttgtg 32
>26441_tgu-mir-100-2:mirbase
Length = 111
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtg 33
||||||||||||||||||| ||||||
Sbjct: 7 cacaaacccgtagatccgaacttgtg 32
>31827_mmu-mir-100:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtg 33
||||||||||||||||||| ||||||
Sbjct: 9 cacaaacccgtagatccgaacttgtg 34
>32708_rno-mir-100:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtg 33
||||||||||||||||||| ||||||
Sbjct: 9 cacaaacccgtagatccgaacttgtg 34
>33958_ssc-mir-100:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 8 cacaaacccgtagatccgatcttgtg 33
||||||||||||||||||| ||||||
Sbjct: 12 cacaaacccgtagatccgaacttgtg 37
>38866_lgi-mir-100:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtg 33
|||||||||||||||| ||||||
Sbjct: 20 aaacccgtagatccgaacttgtg 42
>24672_bfl-mir-100:mirbase
Length = 100
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtg 33
|||||||||||||||| ||||||
Sbjct: 20 aaacccgtagatccgaacttgtg 42
>25755_xtr-mir-100:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtg 33
|||||||||||||||| ||||||
Sbjct: 9 aaacccgtagatccgaacttgtg 31
>26997_eca-mir-100:mirbase
Length = 55
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtgg 34
||||||||||||||| |||||||
Sbjct: 1 aacccgtagatccgaacttgtgg 23
>34877_sko-mir-100:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtg 33
|||||||||||||||| ||||||
Sbjct: 20 aaacccgtagatccgaacttgtg 42
>35288_aga-mir-100:mirbase
Length = 92
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 aaacccgtagatccgatcttgtg 33
|||||||||||||||| ||||||
Sbjct: 14 aaacccgtagatccgaacttgtg 36
>35366_ame-mir-100:mirbase
Length = 100
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtgg 34
||||||||||||||| |||||||
Sbjct: 19 aacccgtagatccgaacttgtgg 41
>37648_nvi-mir-100:mirbase
Length = 100
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtgg 34
||||||||||||||| |||||||
Sbjct: 19 aacccgtagatccgaacttgtgg 41
>37737_tca-mir-100:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtgg 34
||||||||||||||| |||||||
Sbjct: 10 aacccgtagatccgaacttgtgg 32
>37738_tca-mir-100:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aacccgtagatccgatcttgtgg 34
||||||||||||||| |||||||
Sbjct: 10 aacccgtagatccgaacttgtgg 32
