miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34278_dre-mir-125a-2:mirbase
Length = 107
Score = 69.9 bits (35), Expect = 3e-13
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 12 tgtccctgagacccttaacctgtgaggtcaaactaggtcacaggtgaggtcctcaggaac 71
||||||||||||||||||||||||| ||| | ||||||||||||||||||| |||||
Sbjct: 27 tgtccctgagacccttaacctgtgatgtcttccaaggtcacaggtgaggtccttgggaac 86
Query: 72 agggctg 78
| |||||
Sbjct: 87 acggctg 93
>25764_xtr-mir-125a:mirbase
Length = 62
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 gtccctgagacccttaacctgtgagg 38
||||||||||||||||||||||||||
Sbjct: 1 gtccctgagacccttaacctgtgagg 26
>34588_fru-mir-125a:mirbase
Length = 66
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 12 tgtccctgagacccttaacctgtga 36
|||||||||||||||||||||||||
Sbjct: 7 tgtccctgagacccttaacctgtga 31
>34735_tni-mir-125a:mirbase
Length = 63
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 12 tgtccctgagacccttaacctgtga 36
|||||||||||||||||||||||||
Sbjct: 4 tgtccctgagacccttaacctgtga 28
>27009_eca-mir-125a:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 2e-05
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 13 gtccctgagaccc-ttaacctgtgaggtcaaactaggtcacaggtgaggt 61
||||||||||||| ||||||||||||| || | |||||||||||||||
Sbjct: 5 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggt 54
>27010_eca-mir-125a:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 2e-05
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 13 gtccctgagaccc-ttaacctgtgaggtcaaactaggtcacaggtgaggt 61
||||||||||||| ||||||||||||| || | |||||||||||||||
Sbjct: 5 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggt 54
>27717_mml-mir-125a:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 13 gtccctgagaccc-ttaacctgtgaggtcaaactaggtcacaggtgaggt 61
||||||||||||| ||||||||||||| || | |||||||||||||||
Sbjct: 14 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggt 63
>27718_mml-mir-125a:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 13 gtccctgagaccc-ttaacctgtgaggtcaaactaggtcacaggtgaggt 61
||||||||||||| ||||||||||||| || | |||||||||||||||
Sbjct: 14 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggt 63
>28430_hsa-mir-125a:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 13 gtccctgagaccc-ttaacctgtgaggtcaaactaggtcacaggtgaggt 61
||||||||||||| ||||||||||||| || | |||||||||||||||
Sbjct: 14 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggt 63
>28431_hsa-mir-125a:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 13 gtccctgagaccc-ttaacctgtgaggtcaaactaggtcacaggtgaggt 61
||||||||||||| ||||||||||||| || | |||||||||||||||
Sbjct: 14 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggt 63
>30209_ptr-mir-125a:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 13 gtccctgagaccc-ttaacctgtgaggtcaaactaggtcacaggtgaggt 61
||||||||||||| ||||||||||||| || | |||||||||||||||
Sbjct: 13 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggt 62
>30817_ppy-mir-125a:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 13 gtccctgagaccc-ttaacctgtgaggtcaaactaggtcacaggtgaggt 61
||||||||||||| ||||||||||||| || | |||||||||||||||
Sbjct: 14 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggt 63
>30818_ppy-mir-125a:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 13 gtccctgagaccc-ttaacctgtgaggtcaaactaggtcacaggtgaggt 61
||||||||||||| ||||||||||||| || | |||||||||||||||
Sbjct: 14 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggt 63
>33970_ssc-mir-125a:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 44/50 (88%), Gaps = 1/50 (2%)
Strand = Plus / Plus
Query: 13 gtccctgagaccc-ttaacctgtgaggtcaaactaggtcacaggtgaggt 61
||||||||||||| ||||||||||||| || | |||||||||||||||
Sbjct: 10 gtccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggt 59
>26689_cfa-mir-125a:mirbase
Length = 60
Score = 42.1 bits (21), Expect = 6e-05
Identities = 43/49 (87%), Gaps = 1/49 (2%)
Strand = Plus / Plus
Query: 14 tccctgagaccctt-aacctgtgaggtcaaactaggtcacaggtgaggt 61
|||||||||||||| ||||||||||| || | |||||||||||||||
Sbjct: 1 tccctgagaccctttaacctgtgaggacatccagggtcacaggtgaggt 49
>31841_mmu-mir-125a:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 0.001
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 13 gtccctgagaccc-ttaacctgtgagg 38
||||||||||||| |||||||||||||
Sbjct: 5 gtccctgagaccctttaacctgtgagg 31
>31842_mmu-mir-125a:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 0.001
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 13 gtccctgagaccc-ttaacctgtgagg 38
||||||||||||| |||||||||||||
Sbjct: 5 gtccctgagaccctttaacctgtgagg 31
>32720_rno-mir-125a:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 0.001
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 13 gtccctgagaccc-ttaacctgtgagg 38
||||||||||||| |||||||||||||
Sbjct: 14 gtccctgagaccctttaacctgtgagg 40
>32721_rno-mir-125a:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 0.001
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 13 gtccctgagaccc-ttaacctgtgagg 38
||||||||||||| |||||||||||||
Sbjct: 14 gtccctgagaccctttaacctgtgagg 40
>33201_bta-mir-125a:mirbase
Length = 86
Score = 38.2 bits (19), Expect = 0.001
Identities = 26/27 (96%), Gaps = 1/27 (3%)
Strand = Plus / Plus
Query: 13 gtccctgagaccc-ttaacctgtgagg 38
||||||||||||| |||||||||||||
Sbjct: 14 gtccctgagaccctttaacctgtgagg 40
