miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27379_mdo-mir-129:mirbase
Length = 74
Score = 113 bits (57), Expect = 2e-26
Identities = 66/69 (95%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttaccccaa 72
|||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttccttaaatcagtagtcaggaagcccttaccccaa 64
Query: 73 aaagtatct 81
|||||||||
Sbjct: 65 aaagtatct 73
>31484_oan-mir-129:mirbase
Length = 128
Score = 109 bits (55), Expect = 3e-25
Identities = 67/71 (94%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttaccccaa 72
||||||||||||||||||||||||||||| || |||||| |||||||||||||||||||
Sbjct: 29 tctttttgcggtctgggcttgctgttcctctaatcagtagtcaggaagcccttaccccaa 88
Query: 73 aaagtatctgc 83
|||||||||||
Sbjct: 89 aaagtatctgc 99
>34594_fru-mir-129-2:mirbase
Length = 73
Score = 103 bits (52), Expect = 2e-23
Identities = 68/72 (94%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 11 ggtctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttacccc 70
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 3 ggtctttttgcggtctgggcttgctgttccta-aggcagtagccaggaagcccttacccc 61
Query: 71 aaaaagtatctg 82
||||||||||||
Sbjct: 62 aaaaagtatctg 73
>34741_tni-mir-129-2:mirbase
Length = 71
Score = 101 bits (51), Expect = 8e-23
Identities = 67/71 (94%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 11 ggtctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttacccc 70
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 2 ggtctttttgcggtctgggcttgctgttccta-aggcagtagccaggaagcccttacccc 60
Query: 71 aaaaagtatct 81
|||||||||||
Sbjct: 61 aaaaagtatct 71
>27018_eca-mir-129a:mirbase
Length = 73
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttaccccaa 72
||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaa 64
Query: 73 aaagtatct 81
|||||||||
Sbjct: 65 aaagtatct 73
>27019_eca-mir-129a:mirbase
Length = 73
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttaccccaa 72
||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaa 64
Query: 73 aaagtatct 81
|||||||||
Sbjct: 65 aaagtatct 73
>27725_mml-mir-129:mirbase
Length = 72
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttaccccaa 72
||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 4 tctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaa 63
Query: 73 aaagtatct 81
|||||||||
Sbjct: 64 aaagtatct 72
>27726_mml-mir-129:mirbase
Length = 72
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttaccccaa 72
||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 4 tctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaa 63
Query: 73 aaagtatct 81
|||||||||
Sbjct: 64 aaagtatct 72
>28439_hsa-mir-129-1:mirbase
Length = 72
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttaccccaa 72
||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 4 tctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaa 63
Query: 73 aaagtatct 81
|||||||||
Sbjct: 64 aaagtatct 72
>30216_ptr-mir-129-1:mirbase
Length = 71
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttaccccaa 72
||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 3 tctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaa 62
Query: 73 aaagtatct 81
|||||||||
Sbjct: 63 aaagtatct 71
>30825_ppy-mir-129-1:mirbase
Length = 72
Score = 97.6 bits (49), Expect = 1e-21
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttaccccaa 72
||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||
Sbjct: 4 tctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaa 63
Query: 73 aaagtatct 81
|||||||||
Sbjct: 64 aaagtatct 72
>33978_ssc-mir-129b:mirbase
Length = 84
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttaccccaa 72
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 10 tctttttgcggtctgggcttgctgttcctctctacagtagtcaggaagcccttaccccaa 69
Query: 73 aaagtatctgc 83
|||||||||||
Sbjct: 70 aaagtatctgc 80
>26696_cfa-mir-129-1:mirbase
Length = 65
Score = 89.7 bits (45), Expect = 3e-19
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 14 ctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttaccccaaa 73
|||||||||||||||||||||||||||| | |||||| ||||||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgttcctctcaacagtagtcaggaagcccttaccccaaa 60
Query: 74 aagta 78
|||||
Sbjct: 61 aagta 65
>33208_bta-mir-129-1:mirbase
Length = 72
Score = 89.7 bits (45), Expect = 3e-19
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttaccccaa 72
||||||||||||||||||||||||||||| |||||| |||||||||||||||||||
Sbjct: 4 tctttttgcggtctgggcttgctgttcctctctacagtagtcaggaagcccttaccccaa 63
Query: 73 aaagtatct 81
|||||||||
Sbjct: 64 aaagtatct 72
>31852_mmu-mir-129-1:mirbase
Length = 73
Score = 85.7 bits (43), Expect = 5e-18
Identities = 65/70 (92%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttc-cttgaaccagtagccaggaagcccttacccca 71
||||||||||||||||||||||||||| || || |||||| ||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttctctcga--cagtagtcaggaagcccttacccca 62
Query: 72 aaaagtatct 81
||||||||||
Sbjct: 63 aaaagtatct 72
>31853_mmu-mir-129-1:mirbase
Length = 73
Score = 85.7 bits (43), Expect = 5e-18
Identities = 65/70 (92%), Gaps = 3/70 (4%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttc-cttgaaccagtagccaggaagcccttacccca 71
||||||||||||||||||||||||||| || || |||||| ||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttctctcga--cagtagtcaggaagcccttacccca 62
Query: 72 aaaagtatct 81
||||||||||
Sbjct: 63 aaaagtatct 72
>32729_rno-mir-129-1:mirbase
Length = 72
Score = 85.7 bits (43), Expect = 5e-18
Identities = 65/71 (91%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 11 ggtctttttgcggtctgggcttgctgttccttgaaccagtagccaggaagcccttacccc 70
||||||||||||||||||||||||||||| | || ||||| |||||||||||||||||
Sbjct: 3 ggtctttttgcggtctgggcttgctgttctctccac-agtagtcaggaagcccttacccc 61
Query: 71 aaaaagtatct 81
|||||||||||
Sbjct: 62 aaaaagtatct 72
>25771_xtr-mir-129-2:mirbase
Length = 82
Score = 54.0 bits (27), Expect = 2e-08
Identities = 57/65 (87%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 14 ctttttgcggtctgggcttgctgttccttgaacc--agtagccaggaagcccttacccca 71
|||||||||||||||||||||||||| | || | |||| |||||||||||||| ||||
Sbjct: 9 ctttttgcggtctgggcttgctgttc--tcaatcaaagtatccaggaagcccttatccca 66
Query: 72 aaaag 76
|||||
Sbjct: 67 aaaag 71
>34288_dre-mir-129-2:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttc 39
|||||||||||||||||||||||||||
Sbjct: 13 tctttttgcggtctgggcttgctgttc 39
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 ggaagcccttaccccaaaaag 76
|||||||||||||||||||||
Sbjct: 53 ggaagcccttaccccaaaaag 73
>34593_fru-mir-129-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttc 39
|||||||||||||||||||||||||||
Sbjct: 13 tctttttgcggtctgggcttgctgttc 39
>34740_tni-mir-129-1:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttc 39
|||||||||||||||||||||||||||
Sbjct: 13 tctttttgcggtctgggcttgctgttc 39
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 ggaagcccttaccccaaaaag 76
|||||||||||||||||||||
Sbjct: 51 ggaagcccttaccccaaaaag 71
>27020_eca-mir-129b:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 7e-08
Identities = 58/65 (89%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaac-cagtagccaggaagcccttacccca 71
||||||||||||||||||||||||| | | ||| || ||||| ||||||||||||||||
Sbjct: 6 tctttttgcggtctgggcttgctgtacat--aactcaatagcc-ggaagcccttacccca 62
Query: 72 aaaag 76
|||||
Sbjct: 63 aaaag 67
>27021_eca-mir-129b:mirbase
Length = 74
Score = 52.0 bits (26), Expect = 7e-08
Identities = 58/65 (89%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaac-cagtagccaggaagcccttacccca 71
||||||||||||||||||||||||| | | ||| || ||||| ||||||||||||||||
Sbjct: 6 tctttttgcggtctgggcttgctgtacat--aactcaatagcc-ggaagcccttacccca 62
Query: 72 aaaag 76
|||||
Sbjct: 63 aaaag 67
>27727_mml-mir-129-2:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 7e-08
Identities = 58/65 (89%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaac-cagtagccaggaagcccttacccca 71
||||||||||||||||||||||||| | | ||| || ||||| ||||||||||||||||
Sbjct: 15 tctttttgcggtctgggcttgctgtacat--aactcaatagcc-ggaagcccttacccca 71
Query: 72 aaaag 76
|||||
Sbjct: 72 aaaag 76
>28440_hsa-mir-129-2:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 58/65 (89%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaac-cagtagccaggaagcccttacccca 71
||||||||||||||||||||||||| | | ||| || ||||| ||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgtacat--aactcaatagcc-ggaagcccttacccca 70
Query: 72 aaaag 76
|||||
Sbjct: 71 aaaag 75
>28441_hsa-mir-129-2:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 58/65 (89%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaac-cagtagccaggaagcccttacccca 71
||||||||||||||||||||||||| | | ||| || ||||| ||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgtacat--aactcaatagcc-ggaagcccttacccca 70
Query: 72 aaaag 76
|||||
Sbjct: 71 aaaag 75
>30217_ptr-mir-129-2:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 7e-08
Identities = 58/65 (89%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaac-cagtagccaggaagcccttacccca 71
||||||||||||||||||||||||| | | ||| || ||||| ||||||||||||||||
Sbjct: 13 tctttttgcggtctgggcttgctgtacat--aactcaatagcc-ggaagcccttacccca 69
Query: 72 aaaag 76
|||||
Sbjct: 70 aaaag 74
>30826_ppy-mir-129-2:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 58/65 (89%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaac-cagtagccaggaagcccttacccca 71
||||||||||||||||||||||||| | | ||| || ||||| ||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgtacat--aactcaatagcc-ggaagcccttacccca 70
Query: 72 aaaag 76
|||||
Sbjct: 71 aaaag 75
>31854_mmu-mir-129-2:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 58/65 (89%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaac-cagtagccaggaagcccttacccca 71
||||||||||||||||||||||||| | | ||| || ||||| ||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgtacat--aactcaatagcc-ggaagcccttacccca 70
Query: 72 aaaag 76
|||||
Sbjct: 71 aaaag 75
>31855_mmu-mir-129-2:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 7e-08
Identities = 58/65 (89%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaac-cagtagccaggaagcccttacccca 71
||||||||||||||||||||||||| | | ||| || ||||| ||||||||||||||||
Sbjct: 14 tctttttgcggtctgggcttgctgtacat--aactcaatagcc-ggaagcccttacccca 70
Query: 72 aaaag 76
|||||
Sbjct: 71 aaaag 75
>32730_rno-mir-129-2:mirbase
Length = 97
Score = 52.0 bits (26), Expect = 7e-08
Identities = 58/65 (89%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaac-cagtagccaggaagcccttacccca 71
||||||||||||||||||||||||| | | ||| || ||||| ||||||||||||||||
Sbjct: 18 tctttttgcggtctgggcttgctgtacat--aactcaatagcc-ggaagcccttacccca 74
Query: 72 aaaag 76
|||||
Sbjct: 75 aaaag 79
>33209_bta-mir-129-2:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 7e-08
Identities = 58/65 (89%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaac-cagtagccaggaagcccttacccca 71
||||||||||||||||||||||||| | | ||| || ||||| ||||||||||||||||
Sbjct: 15 tctttttgcggtctgggcttgctgtacat--aactcaatagcc-ggaagcccttacccca 71
Query: 72 aaaag 76
|||||
Sbjct: 72 aaaag 76
>33210_bta-mir-129-2:mirbase
Length = 94
Score = 52.0 bits (26), Expect = 7e-08
Identities = 58/65 (89%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaac-cagtagccaggaagcccttacccca 71
||||||||||||||||||||||||| | | ||| || ||||| ||||||||||||||||
Sbjct: 15 tctttttgcggtctgggcttgctgtacat--aactcaatagcc-ggaagcccttacccca 71
Query: 72 aaaag 76
|||||
Sbjct: 72 aaaag 76
>33977_ssc-mir-129a:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 7e-08
Identities = 58/65 (89%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttccttgaac-cagtagccaggaagcccttacccca 71
||||||||||||||||||||||||| | | ||| || ||||| ||||||||||||||||
Sbjct: 10 tctttttgcggtctgggcttgctgtacat--aactcaatagcc-ggaagcccttacccca 66
Query: 72 aaaag 76
|||||
Sbjct: 67 aaaag 71
>25770_xtr-mir-129-1:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgt 37
|||||||||||||||||||||||||
Sbjct: 13 tctttttgcggtctgggcttgctgt 37
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 50 tagccaggaagcccttaccccaaaaag 76
||||| |||||||||||||||||||||
Sbjct: 49 tagccgggaagcccttaccccaaaaag 75
>26458_tgu-mir-129:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgt 37
|||||||||||||||||||||||||
Sbjct: 10 tctttttgcggtctgggcttgctgt 34
>26697_cfa-mir-129-2:mirbase
Length = 63
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgt 24
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 ggaagcccttaccccaaaaag 76
|||||||||||||||||||||
Sbjct: 41 ggaagcccttaccccaaaaag 61
>25478_pma-mir-129a:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttc 39
|||||||||||| ||||||||||||||
Sbjct: 14 tctttttgcggtttgggcttgctgttc 40
