miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34593_fru-mir-129-1:mirbase
Length = 89
Score = 103 bits (52), Expect = 2e-23
Identities = 76/83 (91%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 5 ttcacgaatctttttgcggtctgggcttgctgttctcaactatcaa--tgggaagccctt 62
|||||||||||||||||||||||||||||||||||| ||| || ||||||||||||
Sbjct: 5 ttcacgaatctttttgcggtctgggcttgctgttctttactggtaatctgggaagccctt 64
Query: 63 accccaaaaagcatttgcggagg 85
|||||||||||||||||||||||
Sbjct: 65 accccaaaaagcatttgcggagg 87
>34740_tni-mir-129-1:mirbase
Length = 85
Score = 95.6 bits (48), Expect = 5e-21
Identities = 75/83 (90%), Gaps = 2/83 (2%)
Strand = Plus / Plus
Query: 5 ttcacgaatctttttgcggtctgggcttgctgttctcaactatcaatgggaagcccttac 64
||||||||||||||||||||||||||||||||||||| | ||| ||||||||||||
Sbjct: 5 ttcacgaatctttttgcggtctgggcttgctgttctctgc--tcacccggaagcccttac 62
Query: 65 cccaaaaagcatttgcggagggc 87
|||||||||||||||||| ||||
Sbjct: 63 cccaaaaagcatttgcggggggc 85
>28440_hsa-mir-129-2:mirbase
Length = 90
Score = 81.8 bits (41), Expect = 7e-17
Identities = 73/82 (89%), Gaps = 5/82 (6%)
Strand = Plus / Plus
Query: 9 cgaatctttttgcggtctgggcttgctgttctcaactatcaatgg---gaagcccttacc 65
||||||||||||||||||||||||||||| | |||| |||| | ||||||||||||
Sbjct: 10 cgaatctttttgcggtctgggcttgctgtacataact--caatagccggaagcccttacc 67
Query: 66 ccaaaaagcatttgcggagggc 87
||||||||||||||||||||||
Sbjct: 68 ccaaaaagcatttgcggagggc 89
>28441_hsa-mir-129-2:mirbase
Length = 90
Score = 81.8 bits (41), Expect = 7e-17
Identities = 73/82 (89%), Gaps = 5/82 (6%)
Strand = Plus / Plus
Query: 9 cgaatctttttgcggtctgggcttgctgttctcaactatcaatgg---gaagcccttacc 65
||||||||||||||||||||||||||||| | |||| |||| | ||||||||||||
Sbjct: 10 cgaatctttttgcggtctgggcttgctgtacataact--caatagccggaagcccttacc 67
Query: 66 ccaaaaagcatttgcggagggc 87
||||||||||||||||||||||
Sbjct: 68 ccaaaaagcatttgcggagggc 89
>30217_ptr-mir-129-2:mirbase
Length = 89
Score = 81.8 bits (41), Expect = 7e-17
Identities = 73/82 (89%), Gaps = 5/82 (6%)
Strand = Plus / Plus
Query: 9 cgaatctttttgcggtctgggcttgctgttctcaactatcaatgg---gaagcccttacc 65
||||||||||||||||||||||||||||| | |||| |||| | ||||||||||||
Sbjct: 9 cgaatctttttgcggtctgggcttgctgtacataact--caatagccggaagcccttacc 66
Query: 66 ccaaaaagcatttgcggagggc 87
||||||||||||||||||||||
Sbjct: 67 ccaaaaagcatttgcggagggc 88
>30826_ppy-mir-129-2:mirbase
Length = 90
Score = 81.8 bits (41), Expect = 7e-17
Identities = 73/82 (89%), Gaps = 5/82 (6%)
Strand = Plus / Plus
Query: 9 cgaatctttttgcggtctgggcttgctgttctcaactatcaatgg---gaagcccttacc 65
||||||||||||||||||||||||||||| | |||| |||| | ||||||||||||
Sbjct: 10 cgaatctttttgcggtctgggcttgctgtacataact--caatagccggaagcccttacc 67
Query: 66 ccaaaaagcatttgcggagggc 87
||||||||||||||||||||||
Sbjct: 68 ccaaaaagcatttgcggagggc 89
>26458_tgu-mir-129:mirbase
Length = 83
Score = 77.8 bits (39), Expect = 1e-15
Identities = 69/78 (88%), Gaps = 2/78 (2%)
Strand = Plus / Plus
Query: 9 cgaatctttttgcggtctgggcttgctgttctcaactatcaa--tgggaagcccttaccc 66
||||||||||||||||||||||||||||| | ||||| | | |||||||||||||||
Sbjct: 6 cgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagcccttaccc 65
Query: 67 caaaaagcatttgcggag 84
||||||||||| ||||||
Sbjct: 66 caaaaagcattcgcggag 83
>31854_mmu-mir-129-2:mirbase
Length = 90
Score = 77.8 bits (39), Expect = 1e-15
Identities = 77/88 (87%), Gaps = 5/88 (5%)
Strand = Plus / Plus
Query: 3 ctttcacgaatctttttgcggtctgggcttgctgttctcaactatcaat---gggaagcc 59
||||| ||||||||||||||||||||||||||||| | ||| ||||| |||||||
Sbjct: 4 ctttcgcgaatctttttgcggtctgggcttgctgtacataac--tcaatagccggaagcc 61
Query: 60 cttaccccaaaaagcatttgcggagggc 87
|||||||||||||||||| |||||||||
Sbjct: 62 cttaccccaaaaagcattcgcggagggc 89
>31855_mmu-mir-129-2:mirbase
Length = 90
Score = 77.8 bits (39), Expect = 1e-15
Identities = 77/88 (87%), Gaps = 5/88 (5%)
Strand = Plus / Plus
Query: 3 ctttcacgaatctttttgcggtctgggcttgctgttctcaactatcaat---gggaagcc 59
||||| ||||||||||||||||||||||||||||| | ||| ||||| |||||||
Sbjct: 4 ctttcgcgaatctttttgcggtctgggcttgctgtacataac--tcaatagccggaagcc 61
Query: 60 cttaccccaaaaagcatttgcggagggc 87
|||||||||||||||||| |||||||||
Sbjct: 62 cttaccccaaaaagcattcgcggagggc 89
>32730_rno-mir-129-2:mirbase
Length = 97
Score = 73.8 bits (37), Expect = 2e-14
Identities = 72/82 (87%), Gaps = 5/82 (6%)
Strand = Plus / Plus
Query: 9 cgaatctttttgcggtctgggcttgctgttctcaactatcaatgg---gaagcccttacc 65
||||||||||||||||||||||||||||| | |||| |||| | ||||||||||||
Sbjct: 14 cgaatctttttgcggtctgggcttgctgtacataact--caatagccggaagcccttacc 71
Query: 66 ccaaaaagcatttgcggagggc 87
|||||||||||| |||||||||
Sbjct: 72 ccaaaaagcattcgcggagggc 93
>33209_bta-mir-129-2:mirbase
Length = 94
Score = 73.8 bits (37), Expect = 2e-14
Identities = 72/82 (87%), Gaps = 5/82 (6%)
Strand = Plus / Plus
Query: 9 cgaatctttttgcggtctgggcttgctgttctcaactatcaatgg---gaagcccttacc 65
||||||||||||||||||||||||||||| | |||| |||| | ||||||||||||
Sbjct: 11 cgaatctttttgcggtctgggcttgctgtacataact--caatagccggaagcccttacc 68
Query: 66 ccaaaaagcatttgcggagggc 87
|||||||||||| |||||||||
Sbjct: 69 ccaaaaagcattcgcggagggc 90
>33210_bta-mir-129-2:mirbase
Length = 94
Score = 73.8 bits (37), Expect = 2e-14
Identities = 72/82 (87%), Gaps = 5/82 (6%)
Strand = Plus / Plus
Query: 9 cgaatctttttgcggtctgggcttgctgttctcaactatcaatgg---gaagcccttacc 65
||||||||||||||||||||||||||||| | |||| |||| | ||||||||||||
Sbjct: 11 cgaatctttttgcggtctgggcttgctgtacataact--caatagccggaagcccttacc 68
Query: 66 ccaaaaagcatttgcggagggc 87
|||||||||||| |||||||||
Sbjct: 69 ccaaaaagcattcgcggagggc 90
>25770_xtr-mir-129-1:mirbase
Length = 90
Score = 71.9 bits (36), Expect = 7e-14
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 52 gggaagcccttaccccaaaaagcatttgcggagggc 87
||||||||||||||||||||||||||||||||||||
Sbjct: 54 gggaagcccttaccccaaaaagcatttgcggagggc 89
>27727_mml-mir-129-2:mirbase
Length = 92
Score = 71.9 bits (36), Expect = 7e-14
Identities = 71/81 (87%), Gaps = 5/81 (6%)
Strand = Plus / Plus
Query: 10 gaatctttttgcggtctgggcttgctgttctcaactatcaatgg---gaagcccttaccc 66
|||||||||||||||||||||||||||| | |||| |||| | |||||||||||||
Sbjct: 12 gaatctttttgcggtctgggcttgctgtacataact--caatagccggaagcccttaccc 69
Query: 67 caaaaagcatttgcggagggc 87
||||||||||| |||||||||
Sbjct: 70 caaaaagcattcgcggagggc 90
>27020_eca-mir-129b:mirbase
Length = 74
Score = 61.9 bits (31), Expect = 7e-11
Identities = 63/72 (87%), Gaps = 5/72 (6%)
Strand = Plus / Plus
Query: 9 cgaatctttttgcggtctgggcttgctgttctcaactatcaat---gggaagcccttacc 65
||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||
Sbjct: 2 cgaatctttttgcggtctgggcttgctgtacataac--tcaatagccggaagcccttacc 59
Query: 66 ccaaaaagcatt 77
||||||||||||
Sbjct: 60 ccaaaaagcatt 71
>27021_eca-mir-129b:mirbase
Length = 74
Score = 61.9 bits (31), Expect = 7e-11
Identities = 63/72 (87%), Gaps = 5/72 (6%)
Strand = Plus / Plus
Query: 9 cgaatctttttgcggtctgggcttgctgttctcaactatcaat---gggaagcccttacc 65
||||||||||||||||||||||||||||| | ||| ||||| |||||||||||||
Sbjct: 2 cgaatctttttgcggtctgggcttgctgtacataac--tcaatagccggaagcccttacc 59
Query: 66 ccaaaaagcatt 77
||||||||||||
Sbjct: 60 ccaaaaagcatt 71
>33977_ssc-mir-129a:mirbase
Length = 80
Score = 61.9 bits (31), Expect = 7e-11
Identities = 66/76 (86%), Gaps = 5/76 (6%)
Strand = Plus / Plus
Query: 10 gaatctttttgcggtctgggcttgctgttctcaactatcaat---gggaagcccttaccc 66
|||||||||||||||||||||||||||| | ||| ||||| ||||||||||||||
Sbjct: 7 gaatctttttgcggtctgggcttgctgtacataac--tcaatagccggaagcccttaccc 64
Query: 67 caaaaagcatttgcgg 82
||||||||||| ||||
Sbjct: 65 caaaaagcattcgcgg 80
>25771_xtr-mir-129-2:mirbase
Length = 82
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 14 ctttttgcggtctgggcttgctgttctcaa 43
||||||||||||||||||||||||||||||
Sbjct: 9 ctttttgcggtctgggcttgctgttctcaa 38
>31852_mmu-mir-129-1:mirbase
Length = 73
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgttctc 41
||||||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgttctc 33
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaag 73
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>31853_mmu-mir-129-1:mirbase
Length = 73
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgttctc 41
||||||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgttctc 33
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaag 73
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>32729_rno-mir-129-1:mirbase
Length = 72
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttctc 41
|||||||||||||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttctc 33
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaag 73
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>27018_eca-mir-129a:mirbase
Length = 73
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgttc 39
||||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgttc 31
>27019_eca-mir-129a:mirbase
Length = 73
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgttc 39
||||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgttc 31
>27379_mdo-mir-129:mirbase
Length = 74
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgttc 39
||||||||||||||||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgttc 31
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaag 73
|||||||||||||||||||||
Sbjct: 48 ggaagcccttaccccaaaaag 68
>27725_mml-mir-129:mirbase
Length = 72
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgttc 39
||||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgttc 30
>27726_mml-mir-129:mirbase
Length = 72
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgttc 39
||||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgttc 30
>28439_hsa-mir-129-1:mirbase
Length = 72
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgttc 39
||||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgttc 30
>30216_ptr-mir-129-1:mirbase
Length = 71
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgttc 39
||||||||||||||||||||||||||||
Sbjct: 2 atctttttgcggtctgggcttgctgttc 29
>30825_ppy-mir-129-1:mirbase
Length = 72
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgttc 39
||||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgttc 30
>31484_oan-mir-129:mirbase
Length = 128
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgttc 39
||||||||||||||||||||||||||||
Sbjct: 28 atctttttgcggtctgggcttgctgttc 55
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaag 73
|||||||||||||||||||||
Sbjct: 72 ggaagcccttaccccaaaaag 92
>33208_bta-mir-129-1:mirbase
Length = 72
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgttc 39
||||||||||||||||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgttc 30
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaag 73
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>33978_ssc-mir-129b:mirbase
Length = 84
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 12 atctttttgcggtctgggcttgctgttc 39
||||||||||||||||||||||||||||
Sbjct: 9 atctttttgcggtctgggcttgctgttc 36
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaagcatttgcgg 82
||||||||||||||||||||| || |||||
Sbjct: 53 ggaagcccttaccccaaaaagtatctgcgg 82
>25478_pma-mir-129a:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 cgaatctttttgcggtctgggcttgctgttc 39
|||||||||||||||| ||||||||||||||
Sbjct: 10 cgaatctttttgcggtttgggcttgctgttc 40
>34287_dre-mir-129-1:mirbase
Length = 90
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttc 39
|||||||||||||||||||||||||||
Sbjct: 13 tctttttgcggtctgggcttgctgttc 39
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaag 73
|||||||||||||||||||||
Sbjct: 56 ggaagcccttaccccaaaaag 76
>34594_fru-mir-129-2:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttc 39
|||||||||||||||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttc 31
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaag 73
|||||||||||||||||||||
Sbjct: 47 ggaagcccttaccccaaaaag 67
>34741_tni-mir-129-2:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 tctttttgcggtctgggcttgctgttc 39
|||||||||||||||||||||||||||
Sbjct: 4 tctttttgcggtctgggcttgctgttc 30
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaag 73
|||||||||||||||||||||
Sbjct: 46 ggaagcccttaccccaaaaag 66
>26696_cfa-mir-129-1:mirbase
Length = 65
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 14 ctttttgcggtctgggcttgctgttc 39
||||||||||||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgttc 26
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaag 73
|||||||||||||||||||||
Sbjct: 43 ggaagcccttaccccaaaaag 63
>26697_cfa-mir-129-2:mirbase
Length = 63
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 14 ctttttgcggtctgggcttgctgt 37
||||||||||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgt 24
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 53 ggaagcccttaccccaaaaagca 75
|||||||||||||||||||||||
Sbjct: 41 ggaagcccttaccccaaaaagca 63
