miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25773_xtr-mir-130b:mirbase
Length = 76
Score = 83.8 bits (42), Expect = 2e-17
Identities = 68/74 (91%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 6 gcctgacactctttccctgttgcactactgtgggagctgcagcaaagcagtgcaataatg 65
||||||||||||||||||||||||||||||||| || || | ||||||||||||| |||
Sbjct: 3 gcctgacactctttccctgttgcactactgtggcag-tg-aataaagcagtgcaatgatg 60
Query: 66 aaagggcatcagtc 79
||||||||||||||
Sbjct: 61 aaagggcatcagtc 74
>27023_eca-mir-130b:mirbase
Length = 81
Score = 79.8 bits (40), Expect = 3e-16
Identities = 65/71 (91%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 5 tgcctgacactctttccctgttgcactactgtgggagctgcagcaaagcagtgcaataat 64
|||||||||||||||||||||||||||||||||| ||||| | |||||||||||| ||
Sbjct: 5 tgcctgacactctttccctgttgcactactgtgg--gctgctg-gaagcagtgcaatgat 61
Query: 65 gaaagggcatc 75
|||||||||||
Sbjct: 62 gaaagggcatc 72
>33980_ssc-mir-130b:mirbase
Length = 80
Score = 79.8 bits (40), Expect = 3e-16
Identities = 67/75 (89%), Gaps = 2/75 (2%)
Strand = Plus / Plus
Query: 5 tgcctgacactctttccctgttgcactactgtgggagctgcagcaaagcagtgcaataat 64
|||||||||||||||||||||||||||||||||| || | | |||||||||||| ||
Sbjct: 4 tgcctgacactctttccctgttgcactactgtgg--gccactgggaagcagtgcaatgat 61
Query: 65 gaaagggcatcagtc 79
|||||||||||||||
Sbjct: 62 gaaagggcatcagtc 76
>33212_bta-mir-130b:mirbase
Length = 82
Score = 65.9 bits (33), Expect = 4e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 5 tgcctgacactctttccctgttgcactactgtg 37
|||||||||||||||||||||||||||||||||
Sbjct: 5 tgcctgacactctttccctgttgcactactgtg 37
>27729_mml-mir-130b:mirbase
Length = 82
Score = 63.9 bits (32), Expect = 2e-11
Identities = 62/71 (87%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 5 tgcctgacactctttccctgttgcactactgtgggagctgcagcaaagcagtgcaataat 64
|||| ||||||||||||||||||||||||||||| || | | |||||||||||| ||
Sbjct: 5 tgcccgacactctttccctgttgcactactgtgg--gccactgggaagcagtgcaatgat 62
Query: 65 gaaagggcatc 75
|||||||||||
Sbjct: 63 gaaagggcatc 73
>30219_ptr-mir-130b:mirbase
Length = 81
Score = 63.9 bits (32), Expect = 2e-11
Identities = 62/71 (87%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 5 tgcctgacactctttccctgttgcactactgtgggagctgcagcaaagcagtgcaataat 64
|||| ||||||||||||||||||||||||| ||| || || | |||||||||||| ||
Sbjct: 4 tgcccgacactctttccctgttgcactactatgg--gccgctgggaagcagtgcaatgat 61
Query: 65 gaaagggcatc 75
|||||||||||
Sbjct: 62 gaaagggcatc 72
>30828_ppy-mir-130b:mirbase
Length = 82
Score = 63.9 bits (32), Expect = 2e-11
Identities = 62/71 (87%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 5 tgcctgacactctttccctgttgcactactgtgggagctgcagcaaagcagtgcaataat 64
|||| ||||||||||||||||||||||||| ||| || || | |||||||||||| ||
Sbjct: 5 tgcccgacactctttccctgttgcactactatgg--gccgctgggaagcagtgcaatgat 62
Query: 65 gaaagggcatc 75
|||||||||||
Sbjct: 63 gaaagggcatc 73
>26699_cfa-mir-130b:mirbase
Length = 60
Score = 61.9 bits (31), Expect = 7e-11
Identities = 55/62 (88%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 13 actctttccctgttgcactactgtgggagctgcagcaaagcagtgcaataatgaaagggc 72
|||||||||||||||||||||||||| || || | |||||||||||| ||||||||||
Sbjct: 1 actctttccctgttgcactactgtgg--gccgctgggaagcagtgcaatgatgaaagggc 58
Query: 73 at 74
||
Sbjct: 59 at 60
>31857_mmu-mir-130b:mirbase
Length = 82
Score = 61.9 bits (31), Expect = 7e-11
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 10 gacactctttccctgttgcactactgtgggagctgcagcaaagcagtgcaataatgaaag 69
||||||||||||||||||||||||||||| || | | |||||||||||| |||||||
Sbjct: 10 gacactctttccctgttgcactactgtgg--gcctctgggaagcagtgcaatgatgaaag 67
Query: 70 ggcatc 75
||||||
Sbjct: 68 ggcatc 73
>32732_rno-mir-130b:mirbase
Length = 82
Score = 61.9 bits (31), Expect = 7e-11
Identities = 58/66 (87%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 10 gacactctttccctgttgcactactgtgggagctgcagcaaagcagtgcaataatgaaag 69
||||||||||||||||||||||||||||| || | | |||||||||||| |||||||
Sbjct: 10 gacactctttccctgttgcactactgtgg--gcctctgggaagcagtgcaatgatgaaag 67
Query: 70 ggcatc 75
||||||
Sbjct: 68 ggcatc 73
>28443_hsa-mir-130b:mirbase
Length = 82
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/71 (85%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 5 tgcctgacactctttccctgttgcactactgtgggagctgcagcaaagcagtgcaataat 64
|||| ||||||||||||||||||||||||| | | || || | |||||||||||| ||
Sbjct: 5 tgcccgacactctttccctgttgcactactatag--gccgctgggaagcagtgcaatgat 62
Query: 65 gaaagggcatc 75
|||||||||||
Sbjct: 63 gaaagggcatc 73
>25948_gga-mir-130b:mirbase
Length = 77
Score = 50.1 bits (25), Expect = 2e-07
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 14 ctctttccctgttgcactactgtgggagctgcagcaaagcagtgcaataatgaaagggca 73
||||||||||||||||||||||| | ||||| | |||||||||||||||||||||
Sbjct: 14 ctctttccctgttgcactactgtcacggtcgcagcga-gcagtgcaataatgaaagggcg 72
Query: 74 tcagt 78
|||||
Sbjct: 73 tcagt 77
>26460_tgu-mir-130b:mirbase
Length = 132
Score = 50.1 bits (25), Expect = 2e-07
Identities = 56/65 (86%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 14 ctctttccctgttgcactactgtgggagctgcagcaaagcagtgcaataatgaaagggca 73
||||||||||||||||||||||| | ||||| | |||||||||||||||||||||
Sbjct: 63 ctctttccctgttgcactactgtcacggtcgcagcga-gcagtgcaataatgaaagggcg 121
Query: 74 tcagt 78
|||||
Sbjct: 122 tcagt 126
