miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34293_dre-mir-130c-2:mirbase
Length = 81
Score = 99.6 bits (50), Expect = 5e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 43 gccctttttctgttgtactactggccaatcagaagagcagtgcaatattaaaagggcatt 102
||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 13 gccctttttctgttgtactactgtgcagtcagatgagcagtgcaatattaaaagggcatt 72
Query: 103 ggctga 108
||||||
Sbjct: 73 ggctga 78
>25947_gga-mir-130a:mirbase
Length = 83
Score = 91.7 bits (46), Expect = 1e-19
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 34 ttgtccattgccctttttctgttgtactactggccaatcagaagagcagtgcaatattaa 93
||||||| ||||||||||||||||||||||||| | | || |||||||||||||||||
Sbjct: 6 ttgtccagagccctttttctgttgtactactggcaattatgatgagcagtgcaatattaa 65
Query: 94 aagggcattggctg 107
||||||||||||||
Sbjct: 66 aagggcattggctg 79
>26459_tgu-mir-130a:mirbase
Length = 72
Score = 89.7 bits (45), Expect = 5e-19
Identities = 60/65 (92%)
Strand = Plus / Plus
Query: 43 gccctttttctgttgtactactggccaatcagaagagcagtgcaatattaaaagggcatt 102
||||||||||||||||||||||||| | | || ||||||||||||||||||||||||||
Sbjct: 4 gccctttttctgttgtactactggcaattatgatgagcagtgcaatattaaaagggcatt 63
Query: 103 ggctg 107
|||||
Sbjct: 64 ggctg 68
>34595_fru-mir-130:mirbase
Length = 79
Score = 83.8 bits (42), Expect = 3e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 42 tgccctttttctgttgtactactggccaatcagaagagcagtgcaatattaaaagggcat 101
|||||||||||||||| || ||||| || | ||| |||||||||||||||||||||||||
Sbjct: 14 tgccctttttctgttgcaccactggacactgagatgagcagtgcaatattaaaagggcat 73
Query: 102 tggctg 107
||||||
Sbjct: 74 tggctg 79
>34742_tni-mir-130:mirbase
Length = 74
Score = 79.8 bits (40), Expect = 5e-16
Identities = 58/64 (90%)
Strand = Plus / Plus
Query: 42 tgccctttttctgttgtactactggccaatcagaagagcagtgcaatattaaaagggcat 101
|||||||||||||||| || ||||| || | ||| |||||||||||||||||||||||||
Sbjct: 11 tgccctttttctgttgcaccactggacactgagatgagcagtgcaatattaaaagggcat 70
Query: 102 tggc 105
||||
Sbjct: 71 tggc 74
>25774_xtr-mir-130c:mirbase
Length = 71
Score = 58.0 bits (29), Expect = 2e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggct 106
|||||||||||||||||||||||||||||
Sbjct: 43 agcagtgcaatattaaaagggcattggct 71
>33211_bta-mir-130a:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggctg 107
||||||||||| ||||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggctg 82
>25479_pma-mir-130a:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 2e-06
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 77 gagcagtgcaatatt-aaaagggcattggctg 107
||||||||||||||| ||||||||||||||||
Sbjct: 51 gagcagtgcaatattaaaaagggcattggctg 82
>25772_xtr-mir-130a:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggc 105
||||||||||| ||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggc 78
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 35 tgtccattgccctttttctgttgtactact 64
|||||| |||||||||| ||||||||||||
Sbjct: 2 tgtccagtgccctttttatgttgtactact 31
>25949_gga-mir-130c:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggc 105
||||||||||| ||||||||||||||||
Sbjct: 58 agcagtgcaatgttaaaagggcattggc 85
>26461_tgu-mir-130c:mirbase
Length = 112
Score = 48.1 bits (24), Expect = 2e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 35 tgtccattgccctttttctgttgtactactgg 66
|||||| |||||||||| ||||||||||||||
Sbjct: 32 tgtccagtgccctttttatgttgtactactgg 63
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggc 105
||||||||||| ||||||||||||||||
Sbjct: 79 agcagtgcaatgttaaaagggcattggc 106
>27728_mml-mir-130a:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggc 105
||||||||||| ||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggc 80
>28211_mne-mir-130a:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggc 105
||||||||||| ||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggc 80
>28303_ggo-mir-130a:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggc 105
||||||||||| ||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggc 80
>28442_hsa-mir-130a:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggc 105
||||||||||| ||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggc 80
>30090_ppa-mir-130a:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggc 105
||||||||||| ||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggc 80
>30218_ptr-mir-130a:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggc 105
||||||||||| ||||||||||||||||
Sbjct: 52 agcagtgcaatgttaaaagggcattggc 79
>30827_ppy-mir-130a:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggc 105
||||||||||| ||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggc 80
>31486_oan-mir-130b:mirbase
Length = 129
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggc 105
||||||||||| ||||||||||||||||
Sbjct: 79 agcagtgcaatgttaaaagggcattggc 106
>33979_ssc-mir-130a:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggc 105
||||||||||| ||||||||||||||||
Sbjct: 48 agcagtgcaatgttaaaagggcattggc 75
>34289_dre-mir-130a-1:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggc 105
||||||||||| ||||||||||||||||
Sbjct: 52 agcagtgcaatgttaaaagggcattggc 79
>34290_dre-mir-130a-2:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 2e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggc 105
||||||||||| ||||||||||||||||
Sbjct: 52 agcagtgcaatgttaaaagggcattggc 79
>27380_mdo-mir-130a:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 3e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcattggctg 107
||||||||||| | ||||||||||||||||
Sbjct: 47 agcagtgcaatgtaaaaagggcattggctg 76
>31856_mmu-mir-130a:mirbase
Length = 64
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 77 gagcagtgcaatattaaaagggcat 101
|||||||||||| ||||||||||||
Sbjct: 39 gagcagtgcaatgttaaaagggcat 63
>32731_rno-mir-130a:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 77 gagcagtgcaatattaaaagggcat 101
|||||||||||| ||||||||||||
Sbjct: 52 gagcagtgcaatgttaaaagggcat 76
>33089_rno-mir-3590:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 77 gagcagtgcaatattaaaagggcat 101
|||||||||||| ||||||||||||
Sbjct: 30 gagcagtgcaatgttaaaagggcat 6
>33090_rno-mir-3590:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 77 gagcagtgcaatattaaaagggcat 101
|||||||||||| ||||||||||||
Sbjct: 30 gagcagtgcaatgttaaaagggcat 6
>26698_cfa-mir-130a:mirbase
Length = 62
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcat 101
||||||||||| ||||||||||||
Sbjct: 39 agcagtgcaatgttaaaagggcat 62
>27022_eca-mir-130a:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 78 agcagtgcaatattaaaagggcat 101
||||||||||| ||||||||||||
Sbjct: 41 agcagtgcaatgttaaaagggcat 64
