miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34292_dre-mir-130c-1:mirbase
Length = 141
Score = 99.6 bits (50), Expect = 3e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 13 gccctttttctgttgtactactgtgcagtcagatgagcagtgcaatattaaaagggcatt 72
||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||
Sbjct: 43 gccctttttctgttgtactactggccaatcagaagagcagtgcaatattaaaagggcatt 102
Query: 73 ggctga 78
||||||
Sbjct: 103 ggctga 108
>25947_gga-mir-130a:mirbase
Length = 83
Score = 89.7 bits (45), Expect = 3e-19
Identities = 71/77 (92%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 2 tgttgaccagggccctttttctgttgtactactgtgcagtca-gatgagcagtgcaatat 60
||||| |||| ||||||||||||||||||||||| ||| | | |||||||||||||||||
Sbjct: 4 tgttgtccagagccctttttctgttgtactactg-gcaattatgatgagcagtgcaatat 62
Query: 61 taaaagggcattggctg 77
|||||||||||||||||
Sbjct: 63 taaaagggcattggctg 79
>26459_tgu-mir-130a:mirbase
Length = 72
Score = 83.8 bits (42), Expect = 2e-17
Identities = 62/66 (93%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 13 gccctttttctgttgtactactgtgcagtca-gatgagcagtgcaatattaaaagggcat 71
||||||||||||||||||||||| ||| | | ||||||||||||||||||||||||||||
Sbjct: 4 gccctttttctgttgtactactg-gcaattatgatgagcagtgcaatattaaaagggcat 62
Query: 72 tggctg 77
||||||
Sbjct: 63 tggctg 68
>34595_fru-mir-130:mirbase
Length = 79
Score = 81.8 bits (41), Expect = 7e-17
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 13 gccctttttctgttgtactactgtgcagtcagatgagcagtgcaatattaaaagggcatt 72
||||||||||||||| || |||| || | ||||||||||||||||||||||||||||||
Sbjct: 15 gccctttttctgttgcaccactggacactgagatgagcagtgcaatattaaaagggcatt 74
Query: 73 ggctg 77
|||||
Sbjct: 75 ggctg 79
>34742_tni-mir-130:mirbase
Length = 74
Score = 77.8 bits (39), Expect = 1e-15
Identities = 57/63 (90%)
Strand = Plus / Plus
Query: 13 gccctttttctgttgtactactgtgcagtcagatgagcagtgcaatattaaaagggcatt 72
||||||||||||||| || |||| || | ||||||||||||||||||||||||||||||
Sbjct: 12 gccctttttctgttgcaccactggacactgagatgagcagtgcaatattaaaagggcatt 71
Query: 73 ggc 75
|||
Sbjct: 72 ggc 74
>25774_xtr-mir-130c:mirbase
Length = 71
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggct 76
|||||||||||||||||||||||||||||
Sbjct: 43 agcagtgcaatattaaaagggcattggct 71
>33211_bta-mir-130a:mirbase
Length = 89
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggctg 77
||||||||||| ||||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggctg 82
>25479_pma-mir-130a:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 2e-07
Identities = 32/33 (96%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 46 tgagcagtgcaatatt-aaaagggcattggctg 77
|||||||||||||||| ||||||||||||||||
Sbjct: 50 tgagcagtgcaatattaaaaagggcattggctg 82
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 13 gccctttttctgttgtactactgt 36
||||||||| ||||||||||||||
Sbjct: 14 gccctttttgtgttgtactactgt 37
>25772_xtr-mir-130a:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 51 agcagtgcaatgttaaaagggcattggc 78
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 ccagggccctttttctgttgtactact 34
|||| ||||||||| ||||||||||||
Sbjct: 5 ccagtgccctttttatgttgtactact 31
>25949_gga-mir-130c:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 58 agcagtgcaatgttaaaagggcattggc 85
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 8 ccagggccctttttctgttgtactact 34
|||| ||||||||| ||||||||||||
Sbjct: 16 ccagcgccctttttatgttgtactact 42
>26461_tgu-mir-130c:mirbase
Length = 112
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 79 agcagtgcaatgttaaaagggcattggc 106
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 8 ccagggccctttttctgttgtactactg 35
|||| ||||||||| |||||||||||||
Sbjct: 35 ccagtgccctttttatgttgtactactg 62
>27728_mml-mir-130a:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggc 80
>28211_mne-mir-130a:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggc 80
>28303_ggo-mir-130a:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggc 80
>28442_hsa-mir-130a:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggc 80
>30090_ppa-mir-130a:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggc 80
>30218_ptr-mir-130a:mirbase
Length = 88
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 52 agcagtgcaatgttaaaagggcattggc 79
>30827_ppy-mir-130a:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggc 80
>31486_oan-mir-130b:mirbase
Length = 129
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 79 agcagtgcaatgttaaaagggcattggc 106
>33979_ssc-mir-130a:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 48 agcagtgcaatgttaaaagggcattggc 75
>34289_dre-mir-130a-1:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 52 agcagtgcaatgttaaaagggcattggc 79
>34290_dre-mir-130a-2:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggc 75
||||||||||| ||||||||||||||||
Sbjct: 52 agcagtgcaatgttaaaagggcattggc 79
>27380_mdo-mir-130a:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcattggctg 77
||||||||||| | ||||||||||||||||
Sbjct: 47 agcagtgcaatgtaaaaagggcattggctg 76
>31856_mmu-mir-130a:mirbase
Length = 64
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 47 gagcagtgcaatattaaaagggcat 71
|||||||||||| ||||||||||||
Sbjct: 39 gagcagtgcaatgttaaaagggcat 63
>32731_rno-mir-130a:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 47 gagcagtgcaatattaaaagggcat 71
|||||||||||| ||||||||||||
Sbjct: 52 gagcagtgcaatgttaaaagggcat 76
>33089_rno-mir-3590:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 47 gagcagtgcaatattaaaagggcat 71
|||||||||||| ||||||||||||
Sbjct: 30 gagcagtgcaatgttaaaagggcat 6
>33090_rno-mir-3590:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 47 gagcagtgcaatattaaaagggcat 71
|||||||||||| ||||||||||||
Sbjct: 30 gagcagtgcaatgttaaaagggcat 6
>26698_cfa-mir-130a:mirbase
Length = 62
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcat 71
||||||||||| ||||||||||||
Sbjct: 39 agcagtgcaatgttaaaagggcat 62
>27022_eca-mir-130a:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 48 agcagtgcaatattaaaagggcat 71
||||||||||| ||||||||||||
Sbjct: 41 agcagtgcaatgttaaaagggcat 64
>31487_oan-mir-130c:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 47 gagcagtgcaatattaaaagggcattggctg 77
|||||||||||| ||||||||||| |||||
Sbjct: 50 gagcagtgcaatggtaaaagggcatcggctg 80
