miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34596_fru-mir-132:mirbase
Length = 85
Score = 75.8 bits (38), Expect = 7e-15
Identities = 74/85 (87%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 15 gtctccatgctgaccgtggctttagattgttactgtagcgttggcac--gtggtaacagt 72
||||||||| | |||||||| |||||||||||||||||| |||| |||||||||||
Sbjct: 1 gtctccatggttaccgtggcattagattgttactgtagcaactgcaccagtggtaacagt 60
Query: 73 ctacagccatggtcgccaaggggca 97
|||||||||||||||| | ||||||
Sbjct: 61 ctacagccatggtcgctagggggca 85
>34743_tni-mir-132:mirbase
Length = 85
Score = 67.9 bits (34), Expect = 2e-12
Identities = 73/85 (85%), Gaps = 2/85 (2%)
Strand = Plus / Plus
Query: 15 gtctccatgctgaccgtggctttagattgttactgtagcgttggcac--gtggtaacagt 72
||||||||| | |||||||| |||||||||||||||||| |||| | |||||||||
Sbjct: 1 gtctccatggttaccgtggcattagattgttactgtagcaactgcaccagcggtaacagt 60
Query: 73 ctacagccatggtcgccaaggggca 97
|||||||||||||||| | ||||||
Sbjct: 61 ctacagccatggtcgctagggggca 85
>25775_xtr-mir-132:mirbase
Length = 87
Score = 60.0 bits (30), Expect = 4e-10
Identities = 56/62 (90%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 27 accgtggctttagattgttactgtagcgttggcacgtggtaacagtctacagccatggtc 86
|||||||||||||||||||||||||| | ||| ||||||||||||||||||||||||
Sbjct: 15 accgtggctttagattgttactgtag-ttctgca-ttggtaacagtctacagccatggtc 72
Query: 87 gc 88
||
Sbjct: 73 gc 74
>27024_eca-mir-132:mirbase
Length = 66
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 64 ggtaacagtctacagccatggtcgcc 89
||||||||||||||||||||||||||
Sbjct: 40 ggtaacagtctacagccatggtcgcc 65
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 27 accgtggctttagattgttactgt 50
||||||||||| ||||||||||||
Sbjct: 6 accgtggctttcgattgttactgt 29
>27381_mdo-mir-132:mirbase
Length = 66
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 64 ggtaacagtctacagccatggtcgcc 89
||||||||||||||||||||||||||
Sbjct: 40 ggtaacagtctacagccatggtcgcc 65
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 27 accgtggctttagattgttactgt 50
||||||||||| ||||||||||||
Sbjct: 6 accgtggctttcgattgttactgt 29
>27730_mml-mir-132:mirbase
Length = 101
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 64 ggtaacagtctacagccatggtcgcc 89
||||||||||||||||||||||||||
Sbjct: 57 ggtaacagtctacagccatggtcgcc 82
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 27 accgtggctttagattgttactgt 50
||||||||||| ||||||||||||
Sbjct: 23 accgtggctttcgattgttactgt 46
>28444_hsa-mir-132:mirbase
Length = 101
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 64 ggtaacagtctacagccatggtcgcc 89
||||||||||||||||||||||||||
Sbjct: 57 ggtaacagtctacagccatggtcgcc 82
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 27 accgtggctttagattgttactgt 50
||||||||||| ||||||||||||
Sbjct: 23 accgtggctttcgattgttactgt 46
>30829_ppy-mir-132:mirbase
Length = 101
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 64 ggtaacagtctacagccatggtcgcc 89
||||||||||||||||||||||||||
Sbjct: 57 ggtaacagtctacagccatggtcgcc 82
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 27 accgtggctttagattgttactgt 50
||||||||||| ||||||||||||
Sbjct: 23 accgtggctttcgattgttactgt 46
>31858_mmu-mir-132:mirbase
Length = 66
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 64 ggtaacagtctacagccatggtcgcc 89
||||||||||||||||||||||||||
Sbjct: 40 ggtaacagtctacagccatggtcgcc 65
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 27 accgtggctttagattgttactgt 50
||||||||||| ||||||||||||
Sbjct: 6 accgtggctttcgattgttactgt 29
>32733_rno-mir-132:mirbase
Length = 101
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 64 ggtaacagtctacagccatggtcgcc 89
||||||||||||||||||||||||||
Sbjct: 57 ggtaacagtctacagccatggtcgcc 82
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 27 accgtggctttagattgttactgt 50
||||||||||| ||||||||||||
Sbjct: 23 accgtggctttcgattgttactgt 46
>33213_bta-mir-132:mirbase
Length = 101
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 64 ggtaacagtctacagccatggtcgcc 89
||||||||||||||||||||||||||
Sbjct: 57 ggtaacagtctacagccatggtcgcc 82
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 27 accgtggctttagattgttactgt 50
||||||||||| ||||||||||||
Sbjct: 23 accgtggctttcgattgttactgt 46
>34294_dre-mir-132-1:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 9e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 15 gtctccatgctgaccgtggctttagattgttactgtag 52
||||||||| ||||||||| |||||||||||||||||
Sbjct: 1 gtctccatggcgaccgtggcattagattgttactgtag 38
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 63 tggtaacagtctacagccatggtcgc 88
||||||||||||||||||||||||||
Sbjct: 51 tggtaacagtctacagccatggtcgc 76
>26700_cfa-mir-132:mirbase
Length = 60
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 64 ggtaacagtctacagccatggtcgc 88
|||||||||||||||||||||||||
Sbjct: 36 ggtaacagtctacagccatggtcgc 60
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 27 accgtggctttagattgttactgt 50
||||||||||| ||||||||||||
Sbjct: 2 accgtggctttcgattgttactgt 25
>25484_pma-mir-132:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 65 gtaacagtctacagccatgg 84
||||||||||||||||||||
Sbjct: 59 gtaacagtctacagccatgg 78
