miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34302_dre-mir-135c-1:mirbase
Length = 80
Score = 75.8 bits (38), Expect = 7e-15
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 28 ctgtgctttatggctttctattcctatgtgattttgatatgatgtatcatgtagggttca 87
||||| ||||||||||||||||||||||||||||| | || || ||| |||||||||
Sbjct: 3 ctgtgttttatggctttctattcctatgtgattttcttctgccgtgtcacatagggttca 62
Query: 88 aagccattaggtacagag 105
|||||||| |||||||||
Sbjct: 63 aagccattgggtacagag 80
>34303_dre-mir-135c-2:mirbase
Length = 80
Score = 75.8 bits (38), Expect = 7e-15
Identities = 68/78 (87%)
Strand = Plus / Plus
Query: 28 ctgtgctttatggctttctattcctatgtgattttgatatgatgtatcatgtagggttca 87
||||| ||||||||||||||||||||||||||||| | || || ||| |||||||||
Sbjct: 3 ctgtgttttatggctttctattcctatgtgattttcttctgccgtgtcacatagggttca 62
Query: 88 aagccattaggtacagag 105
|||||||| |||||||||
Sbjct: 63 aagccattgggtacagag 80
>34598_fru-mir-135a:mirbase
Length = 79
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 28 ctgtgctttatggctttctattcctatgtgatttt 62
||||| |||||||||||||||||||||||||||||
Sbjct: 3 ctgtgttttatggctttctattcctatgtgatttt 37
>34745_tni-mir-135a:mirbase
Length = 79
Score = 61.9 bits (31), Expect = 1e-10
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 28 ctgtgctttatggctttctattcctatgtgatttt 62
||||| |||||||||||||||||||||||||||||
Sbjct: 3 ctgtgttttatggctttctattcctatgtgatttt 37
>25487_pma-mir-135a:mirbase
Length = 86
Score = 58.0 bits (29), Expect = 2e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 28 ctgtgctttatggctttctattcctatgtgatt 60
||||||||||||||||| |||||||||||||||
Sbjct: 7 ctgtgctttatggctttttattcctatgtgatt 39
>27030_eca-mir-135a-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 30 gtgctttatggctttctattcctatgtgat 59
||||||||||||||| ||||||||||||||
Sbjct: 17 gtgctttatggctttttattcctatgtgat 46
>27513_age-mir-135-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 30 gtgctttatggctttctattcctatgtgat 59
||||||||||||||| ||||||||||||||
Sbjct: 17 gtgctttatggctttttattcctatgtgat 46
>27575_lla-mir-135-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 30 gtgctttatggctttctattcctatgtgat 59
||||||||||||||| ||||||||||||||
Sbjct: 17 gtgctttatggctttttattcctatgtgat 46
>27736_mml-mir-135a-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 30 gtgctttatggctttctattcctatgtgat 59
||||||||||||||| ||||||||||||||
Sbjct: 17 gtgctttatggctttttattcctatgtgat 46
>28306_ggo-mir-135:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 30 gtgctttatggctttctattcctatgtgat 59
||||||||||||||| ||||||||||||||
Sbjct: 17 gtgctttatggctttttattcctatgtgat 46
>28450_hsa-mir-135a-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 30 gtgctttatggctttctattcctatgtgat 59
||||||||||||||| ||||||||||||||
Sbjct: 17 gtgctttatggctttttattcctatgtgat 46
>30094_ppa-mir-135-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 30 gtgctttatggctttctattcctatgtgat 59
||||||||||||||| ||||||||||||||
Sbjct: 17 gtgctttatggctttttattcctatgtgat 46
>30225_ptr-mir-135a-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 30 gtgctttatggctttctattcctatgtgat 59
||||||||||||||| ||||||||||||||
Sbjct: 17 gtgctttatggctttttattcctatgtgat 46
>30834_ppy-mir-135:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 30 gtgctttatggctttctattcctatgtgat 59
||||||||||||||| ||||||||||||||
Sbjct: 17 gtgctttatggctttttattcctatgtgat 46
>31864_mmu-mir-135a-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 30 gtgctttatggctttctattcctatgtgat 59
||||||||||||||| ||||||||||||||
Sbjct: 17 gtgctttatggctttttattcctatgtgat 46
>32737_rno-mir-135a:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 30 gtgctttatggctttctattcctatgtgat 59
||||||||||||||| ||||||||||||||
Sbjct: 17 gtgctttatggctttttattcctatgtgat 46
>33219_bta-mir-135a-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 30 gtgctttatggctttctattcctatgtgat 59
||||||||||||||| ||||||||||||||
Sbjct: 17 gtgctttatggctttttattcctatgtgat 46
>33987_ssc-mir-135-2:mirbase
Length = 100
Score = 52.0 bits (26), Expect = 1e-07
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 30 gtgctttatggctttctattcctatgtgat 59
||||||||||||||| ||||||||||||||
Sbjct: 17 gtgctttatggctttttattcctatgtgat 46
>26466_tgu-mir-135a-2:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 4e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 28 ctgtgctttatggctttctattcctatgtgatt 60
||||| ||||||||||| |||||||||||||||
Sbjct: 7 ctgtggtttatggctttttattcctatgtgatt 39
>26705_cfa-mir-135a-1:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 36 tatggctttctattcctatgtgatttt 62
||||||||| |||||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatttt 43
>25780_xtr-mir-135-1:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 34 tttatggctttctattcctatgtgat 59
||||||||||| ||||||||||||||
Sbjct: 21 tttatggctttttattcctatgtgat 46
>25954_gga-mir-135a-1:mirbase
Length = 88
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 27 actgtgctttatggctttctattcctatgtgatt 60
||||| || ||||||||| |||||||||||||||
Sbjct: 6 actgtcctgtatggctttttattcctatgtgatt 39
>25955_gga-mir-135a-2:mirbase
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 34 tttatggctttctattcctatgtgat 59
||||||||||| ||||||||||||||
Sbjct: 21 tttatggctttttattcctatgtgat 46
>26465_tgu-mir-135a-1:mirbase
Length = 73
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 34 tttatggctttctattcctatgtgat 59
||||||||||| ||||||||||||||
Sbjct: 9 tttatggctttttattcctatgtgat 34
>31491_oan-mir-135a:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 34 tttatggctttctattcctatgtgat 59
||||||||||| ||||||||||||||
Sbjct: 27 tttatggctttttattcctatgtgat 52
>31863_mmu-mir-135a-1:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 27 actgtgctttatggctttctattcctatgtgatt 60
||||| || ||||||||| |||||||||||||||
Sbjct: 8 actgttctctatggctttttattcctatgtgatt 41
>25781_xtr-mir-135-2:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 36 tatggctttctattcctatgtgatt 60
||||||||| |||||||||||||||
Sbjct: 16 tatggctttttattcctatgtgatt 40
>25956_gga-mir-135a-3:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 36 tatggctttctattcctatgtgatt 60
||||||||| |||||||||||||||
Sbjct: 16 tatggctttttattcctatgtgatt 40
>26467_tgu-mir-135b:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 36 tatggctttctattcctatgtgatt 60
||||||||| |||||||||||||||
Sbjct: 11 tatggctttttattcctatgtgatt 35
>26706_cfa-mir-135a-2:mirbase
Length = 62
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 35 ttatggctttctattcctatgtgat 59
|||||||||| ||||||||||||||
Sbjct: 1 ttatggctttttattcctatgtgat 25
>26707_cfa-mir-135a-2:mirbase
Length = 62
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 35 ttatggctttctattcctatgtgat 59
|||||||||| ||||||||||||||
Sbjct: 1 ttatggctttttattcctatgtgat 25
>27029_eca-mir-135a:mirbase
Length = 60
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 36 tatggctttctattcctatgtgatt 60
||||||||| |||||||||||||||
Sbjct: 2 tatggctttttattcctatgtgatt 26
>27383_mdo-mir-135a:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 35 ttatggctttctattcctatgtgat 59
|||||||||| ||||||||||||||
Sbjct: 22 ttatggctttttattcctatgtgat 46
>27512_age-mir-135-1:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 36 tatggctttctattcctatgtgatt 60
||||||||| |||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>27574_lla-mir-135-1:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 36 tatggctttctattcctatgtgatt 60
||||||||| |||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>27735_mml-mir-135a-1:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 36 tatggctttctattcctatgtgatt 60
||||||||| |||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>28449_hsa-mir-135a-1:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 36 tatggctttctattcctatgtgatt 60
||||||||| |||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>30093_ppa-mir-135-1:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 36 tatggctttctattcctatgtgatt 60
||||||||| |||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>30224_ptr-mir-135a-1:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 36 tatggctttctattcctatgtgatt 60
||||||||| |||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>30835_ppy-mir-135a-1:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 36 tatggctttctattcctatgtgatt 60
||||||||| |||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>31492_oan-mir-135b:mirbase
Length = 114
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 36 tatggctttctattcctatgtgatt 60
||||||||| |||||||||||||||
Sbjct: 31 tatggctttttattcctatgtgatt 55
>33218_bta-mir-135a-1:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 36 tatggctttctattcctatgtgatt 60
||||||||| |||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>33986_ssc-mir-135-1:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 36 tatggctttctattcctatgtgatt 60
||||||||| |||||||||||||||
Sbjct: 17 tatggctttttattcctatgtgatt 41
>34300_dre-mir-135a:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 35 ttatggctttctattcctatgtga 58
|||||||||| |||||||||||||
Sbjct: 15 ttatggctttttattcctatgtga 38
