miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34601_fru-mir-138:mirbase
Length = 79
Score = 93.7 bits (47), Expect = 2e-20
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 6 gctgcagctggtgttgtgaatcaggccgatgtcacacgtcagcgataacccggctatttc 65
||||||||||||||||||||||||||||||| || || | | |||| |||||||||||
Sbjct: 1 gctgcagctggtgttgtgaatcaggccgatgacagacacctcctataagccggctatttc 60
Query: 66 acaacaccagggtggcacc 84
|||||||||||||||||||
Sbjct: 61 acaacaccagggtggcacc 79
>34748_tni-mir-138:mirbase
Length = 79
Score = 85.7 bits (43), Expect = 5e-18
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 6 gctgcagctggtgttgtgaatcaggccgatgtcacacgtcagcgataacccggctatttc 65
||||||||||||||||||||||||||||||| || || | | | || |||||||||||
Sbjct: 1 gctgcagctggtgttgtgaatcaggccgatgacagacacctcctagaagccggctatttc 60
Query: 66 acaacaccagggtggcacc 84
|||||||||||||||||||
Sbjct: 61 acaacaccagggtggcacc 79
>31496_oan-mir-138-2:mirbase
Length = 115
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 4 gtgctgcagctggtgttgtgaatcaggccga 34
|||||||||||||||||||||||||||||||
Sbjct: 20 gtgctgcagctggtgttgtgaatcaggccga 50
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 acccggctatttcacaacaccagggt 78
||||||||||||||| ||||||||||
Sbjct: 69 acccggctatttcactacaccagggt 94
>25960_gga-mir-138-2:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 tgctgcagctggtgttgtgaatcaggccga 34
||||||||||||||||||||||||||||||
Sbjct: 3 tgctgcagctggtgttgtgaatcaggccga 32
>26470_tgu-mir-138-2:mirbase
Length = 93
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 tgctgcagctggtgttgtgaatcaggccga 34
||||||||||||||||||||||||||||||
Sbjct: 5 tgctgcagctggtgttgtgaatcaggccga 34
>27034_eca-mir-138:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 tgctgcagctggtgttgtgaatcaggccga 34
||||||||||||||||||||||||||||||
Sbjct: 4 tgctgcagctggtgttgtgaatcaggccga 33
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 acccggctatttcacaacaccagggt 78
||||||||||||||| ||||||||||
Sbjct: 52 acccggctatttcacgacaccagggt 77
>27386_mdo-mir-138:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 tgctgcagctggtgttgtgaatcaggccga 34
||||||||||||||||||||||||||||||
Sbjct: 3 tgctgcagctggtgttgtgaatcaggccga 32
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 acccggctatttcacaacaccagggt 78
||||||||||||||| ||||||||||
Sbjct: 51 acccggctatttcactacaccagggt 76
>27740_mml-mir-138:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 tgctgcagctggtgttgtgaatcaggccga 34
||||||||||||||||||||||||||||||
Sbjct: 4 tgctgcagctggtgttgtgaatcaggccga 33
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 acccggctatttcacaacaccagggt 78
||||||||||||||| ||||||||||
Sbjct: 52 acccggctatttcacgacaccagggt 77
>28455_hsa-mir-138-2:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 tgctgcagctggtgttgtgaatcaggccga 34
||||||||||||||||||||||||||||||
Sbjct: 4 tgctgcagctggtgttgtgaatcaggccga 33
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 acccggctatttcacaacaccagggt 78
||||||||||||||| ||||||||||
Sbjct: 52 acccggctatttcacgacaccagggt 77
>30229_ptr-mir-138:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 tgctgcagctggtgttgtgaatcaggccga 34
||||||||||||||||||||||||||||||
Sbjct: 3 tgctgcagctggtgttgtgaatcaggccga 32
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 acccggctatttcacaacaccagggt 78
||||||||||||||| ||||||||||
Sbjct: 51 acccggctatttcacgacaccagggt 76
>30839_ppy-mir-138-2:mirbase
Length = 84
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 tgctgcagctggtgttgtgaatcaggccga 34
||||||||||||||||||||||||||||||
Sbjct: 4 tgctgcagctggtgttgtgaatcaggccga 33
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 acccggctatttcacaacaccagggt 78
||||||||||||||| ||||||||||
Sbjct: 52 acccggctatttcacgacaccagggt 77
>32742_rno-mir-138-2:mirbase
Length = 82
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 tgctgcagctggtgttgtgaatcaggccga 34
||||||||||||||||||||||||||||||
Sbjct: 3 tgctgcagctggtgttgtgaatcaggccga 32
Score = 48.1 bits (24), Expect = 1e-06
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 53 acccggctatttcacaacaccagggtggcacc 84
||||||||||||||| |||||||||| |||||
Sbjct: 51 acccggctatttcacgacaccagggttgcacc 82
>33224_bta-mir-138-2:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 5 tgctgcagctggtgttgtgaatcaggccga 34
||||||||||||||||||||||||||||||
Sbjct: 3 tgctgcagctggtgttgtgaatcaggccga 32
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 acccggctatttcacaacaccagggt 78
||||||||||||||| ||||||||||
Sbjct: 51 acccggctatttcacgacaccagggt 76
>25959_gga-mir-138-1:mirbase
Length = 96
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 gtgctgcagctggtgttgtgaatcaggccg 33
|||| |||||||||||||||||||||||||
Sbjct: 15 gtgcagcagctggtgttgtgaatcaggccg 44
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 56 cggctatttcacaacaccagggtggcac 83
|||||| |||||||||||||||||||||
Sbjct: 60 cggctacttcacaacaccagggtggcac 87
>25491_pma-mir-138a:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gcagctggtgttgtgaatcaggccg 33
|||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccg 31
>25785_xtr-mir-138:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gcagctggtgttgtgaatcaggccg 33
|||||||||||||||||||||||||
Sbjct: 13 gcagctggtgttgtgaatcaggccg 37
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 56 cggctatttcacaacaccagggt 78
|||||| ||||||||||||||||
Sbjct: 53 cggctacttcacaacaccagggt 75
>28454_hsa-mir-138-1:mirbase
Length = 99
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gcagctggtgttgtgaatcaggccg 33
|||||||||||||||||||||||||
Sbjct: 21 gcagctggtgttgtgaatcaggccg 45
>31495_oan-mir-138-1:mirbase
Length = 137
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gcagctggtgttgtgaatcaggccg 33
|||||||||||||||||||||||||
Sbjct: 88 gcagctggtgttgtgaatcaggccg 112
>31869_mmu-mir-138-2:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccga 34
|||||||||||||||||||||||||
Sbjct: 1 cagctggtgttgtgaatcaggccga 25
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 acccggctatttcacaacaccagggt 78
||||||||||||||| ||||||||||
Sbjct: 44 acccggctatttcacgacaccagggt 69
>33223_bta-mir-138-1:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 gcagctggtgttgtgaatcaggccg 33
|||||||||||||||||||||||||
Sbjct: 19 gcagctggtgttgtgaatcaggccg 43
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 56 cggctatttcacaacaccagggt 78
|||||| ||||||||||||||||
Sbjct: 59 cggctacttcacaacaccagggt 81
>25492_pma-mir-138b:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 4 gtgctgcagctggtgttgtgaatcaggc 31
|||| |||||||||||||||||||||||
Sbjct: 8 gtgccgcagctggtgttgtgaatcaggc 35
>26469_tgu-mir-138-1:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 10 cagctggtgttgtgaatcaggccg 33
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 56 cggctatttcacaacaccagggt 78
|||||| ||||||||||||||||
Sbjct: 49 cggctacttcacaacaccagggt 71
>31868_mmu-mir-138-1:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 22 cagctggtgttgtgaatcaggccg 45
>32741_rno-mir-138-1:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 cagctggtgttgtgaatcaggccg 33
||||||||||||||||||||||||
Sbjct: 22 cagctggtgttgtgaatcaggccg 45
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 56 cggctatttcacaacaccagggt 78
|||||| ||||||||||||||||
Sbjct: 61 cggctacttcacaacaccagggt 83
>26711_cfa-mir-138a:mirbase
Length = 62
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 agctggtgttgtgaatcaggccg 33
|||||||||||||||||||||||
Sbjct: 1 agctggtgttgtgaatcaggccg 23
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 56 cggctatttcacaacaccagggt 78
|||||| ||||||||||||||||
Sbjct: 39 cggctacttcacaacaccagggt 61
>27035_eca-mir-138-2:mirbase
Length = 59
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 agctggtgttgtgaatcaggccg 33
|||||||||||||||||||||||
Sbjct: 1 agctggtgttgtgaatcaggccg 23
>26712_cfa-mir-138b:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 53 acccggctatttcacaacaccagggt 78
||||||||||||||| ||||||||||
Sbjct: 43 acccggctatttcacgacaccagggt 68
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 agctggtgttgtgaatcaggccga 34
|||||||||||||||||| |||||
Sbjct: 1 agctggtgttgtgaatcatgccga 24
