miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>27387_mdo-mir-139:mirbase
Length = 69
Score = 63.9 bits (32), Expect = 1e-11
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcatgtgtctccagtgtttctatggcgactggggaggcagcgctgtt 61
|||||||||||||||||||||||||||||| ||| || |||||| || |||| |||||
Sbjct: 1 tgtattctacagtgcatgtgtctccagtgtgactaagg-gactggagatacagccctgtt 59
Query: 62 ggaataac 69
||||||||
Sbjct: 60 ggaataac 67
>26471_tgu-mir-139:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 5e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 1 ctgtattctacagtgcatgtgtctccagtgt 31
|||||||||||||||||||||||||||||||
Sbjct: 8 ctgtattctacagtgcatgtgtctccagtgt 38
>25786_xtr-mir-139:mirbase
Length = 67
Score = 56.0 bits (28), Expect = 3e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcatgtgtctccagt 29
||||||||||||||||||||||||||||
Sbjct: 1 tgtattctacagtgcatgtgtctccagt 28
>27576_lla-mir-139:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcatgtgtctccagtgt 31
|||||||||||||||| |||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgt 31
>27741_mml-mir-139:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcatgtgtctccagtgt 31
|||||||||||||||| |||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgt 31
>27742_mml-mir-139:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcatgtgtctccagtgt 31
|||||||||||||||| |||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgt 31
>28456_hsa-mir-139:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcatgtgtctccagtgt 31
|||||||||||||||| |||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgt 31
>28457_hsa-mir-139:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcatgtgtctccagtgt 31
|||||||||||||||| |||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgt 31
>30096_ppa-mir-139:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcatgtgtctccagtgt 31
|||||||||||||||| |||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgt 31
>30230_ptr-mir-139:mirbase
Length = 67
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcatgtgtctccagtgt 31
|||||||||||||||| |||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgt 31
>30840_ppy-mir-139:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcatgtgtctccagtgt 31
|||||||||||||||| |||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgt 31
>30841_ppy-mir-139:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcatgtgtctccagtgt 31
|||||||||||||||| |||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgt 31
>31870_mmu-mir-139:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcatgtgtctccagtgt 31
|||||||||||||||| |||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgt 31
>31871_mmu-mir-139:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcatgtgtctccagtgt 31
|||||||||||||||| |||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgt 31
>32743_rno-mir-139:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcatgtgtctccagtgt 31
|||||||||||||||| |||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgt 31
>32744_rno-mir-139:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcatgtgtctccagtgt 31
|||||||||||||||| |||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgt 31
>33989_ssc-mir-139:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcatgtgtctccagtgt 31
|||||||||||||||| |||||||||||||
Sbjct: 2 tgtattctacagtgcacgtgtctccagtgt 31
>31497_oan-mir-139:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcatgtgtctccag 28
|||| ||||||||||||||||||||||
Sbjct: 11 tgtagtctacagtgcatgtgtctccag 37
>33225_bta-mir-139:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 2 tgtattctacagtgcatgtgtctccagtgt 31
|||| ||||||||||| |||||||||||||
Sbjct: 2 tgtactctacagtgcacgtgtctccagtgt 31
>27036_eca-mir-139:mirbase
Length = 63
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 tctacagtgcatgtgtctccagtgt 31
||||||||||| |||||||||||||
Sbjct: 4 tctacagtgcacgtgtctccagtgt 28
>27037_eca-mir-139:mirbase
Length = 63
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 tctacagtgcatgtgtctccagtgt 31
||||||||||| |||||||||||||
Sbjct: 4 tctacagtgcacgtgtctccagtgt 28
>26713_cfa-mir-139:mirbase
Length = 57
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 ctacagtgcatgtgtctccagtgt 31
|||||||||| |||||||||||||
Sbjct: 1 ctacagtgcacgtgtctccagtgt 24
