miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25961_gga-mir-140:mirbase
Length = 95
Score = 137 bits (69), Expect = 2e-33
Identities = 75/77 (97%)
Strand = Plus / Plus
Query: 14 gtgtcccgtcagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 73
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 71
Query: 74 gaaccacggacgggatg 90
|||||||||||||||||
Sbjct: 72 gaaccacggacgggatg 88
>27743_mml-mir-140:mirbase
Length = 100
Score = 131 bits (66), Expect = 1e-31
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 12 ctgtgtcccgtcagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 71
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 71
Query: 72 tagaaccacggacgggat 89
||||||||||||| ||||
Sbjct: 72 tagaaccacggacaggat 89
>27744_mml-mir-140:mirbase
Length = 100
Score = 131 bits (66), Expect = 1e-31
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 12 ctgtgtcccgtcagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 71
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 71
Query: 72 tagaaccacggacgggat 89
||||||||||||| ||||
Sbjct: 72 tagaaccacggacaggat 89
>28458_hsa-mir-140:mirbase
Length = 100
Score = 131 bits (66), Expect = 1e-31
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 12 ctgtgtcccgtcagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 71
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 71
Query: 72 tagaaccacggacgggat 89
||||||||||||| ||||
Sbjct: 72 tagaaccacggacaggat 89
>28459_hsa-mir-140:mirbase
Length = 100
Score = 131 bits (66), Expect = 1e-31
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 12 ctgtgtcccgtcagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 71
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 71
Query: 72 tagaaccacggacgggat 89
||||||||||||| ||||
Sbjct: 72 tagaaccacggacaggat 89
>30231_ptr-mir-140:mirbase
Length = 100
Score = 131 bits (66), Expect = 1e-31
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 12 ctgtgtcccgtcagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 71
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 71
Query: 72 tagaaccacggacgggat 89
||||||||||||| ||||
Sbjct: 72 tagaaccacggacaggat 89
>30842_ppy-mir-140:mirbase
Length = 100
Score = 131 bits (66), Expect = 1e-31
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 12 ctgtgtcccgtcagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 71
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 71
Query: 72 tagaaccacggacgggat 89
||||||||||||| ||||
Sbjct: 72 tagaaccacggacaggat 89
>30843_ppy-mir-140:mirbase
Length = 100
Score = 131 bits (66), Expect = 1e-31
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 12 ctgtgtcccgtcagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 71
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 71
Query: 72 tagaaccacggacgggat 89
||||||||||||| ||||
Sbjct: 72 tagaaccacggacaggat 89
>31498_oan-mir-140:mirbase
Length = 123
Score = 131 bits (66), Expect = 1e-31
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 12 ctgtgtcccgtcagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 71
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24 ctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 83
Query: 72 tagaaccacggacgggat 89
||||||||||||| ||||
Sbjct: 84 tagaaccacggacaggat 101
>33226_bta-mir-140:mirbase
Length = 94
Score = 131 bits (66), Expect = 1e-31
Identities = 75/78 (96%)
Strand = Plus / Plus
Query: 12 ctgtgtcccgtcagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 71
|||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 ctgtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 65
Query: 72 tagaaccacggacgggat 89
||||||||||||| ||||
Sbjct: 66 tagaaccacggacaggat 83
>26472_tgu-mir-140:mirbase
Length = 72
Score = 125 bits (63), Expect = 7e-30
Identities = 69/71 (97%)
Strand = Plus / Plus
Query: 14 gtgtcccgtcagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 73
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gtgtcctgccagtggttttaccctatggtaggttacgtcatgctgttctaccacagggta 61
Query: 74 gaaccacggac 84
|||||||||||
Sbjct: 62 gaaccacggac 72
>27388_mdo-mir-140:mirbase
Length = 70
Score = 123 bits (62), Expect = 3e-29
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 23 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 65
Query: 83 ac 84
||
Sbjct: 66 ac 67
>28214_mne-mir-140:mirbase
Length = 100
Score = 123 bits (62), Expect = 3e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 12 ctgtgtcccgtcagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 71
|||||||| | |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 12 ctgtgtcctgccagtggttctaccctatggtaggttacgtcatgctgttctaccacaggg 71
Query: 72 tagaaccacggacgggat 89
||||||||||||| ||||
Sbjct: 72 tagaaccacggacaggat 89
>31872_mmu-mir-140:mirbase
Length = 70
Score = 123 bits (62), Expect = 3e-29
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 23 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 65
Query: 83 ac 84
||
Sbjct: 66 ac 67
>32745_rno-mir-140:mirbase
Length = 99
Score = 123 bits (62), Expect = 3e-29
Identities = 74/78 (94%)
Strand = Plus / Plus
Query: 12 ctgtgtcccgtcagtggttttaccctatggtaggttacgtcatgctgttctaccacaggg 71
|||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 11 ctgtgtcctgccagtggttttaccctatggtaggttacatcatgctgttctaccacaggg 70
Query: 72 tagaaccacggacgggat 89
||||||||||||| ||||
Sbjct: 71 tagaaccacggacaggat 88
>33990_ssc-mir-140:mirbase
Length = 70
Score = 123 bits (62), Expect = 3e-29
Identities = 62/62 (100%)
Strand = Plus / Plus
Query: 23 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 65
Query: 83 ac 84
||
Sbjct: 66 ac 67
>26714_cfa-mir-140:mirbase
Length = 61
Score = 121 bits (61), Expect = 1e-28
Identities = 61/61 (100%)
Strand = Plus / Plus
Query: 23 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 60
Query: 83 a 83
|
Sbjct: 61 a 61
>27038_eca-mir-140:mirbase
Length = 61
Score = 119 bits (60), Expect = 4e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 23 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 61
>27039_eca-mir-140:mirbase
Length = 61
Score = 119 bits (60), Expect = 4e-28
Identities = 60/60 (100%)
Strand = Plus / Plus
Query: 23 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 82
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 61
>25787_xtr-mir-140:mirbase
Length = 94
Score = 117 bits (59), Expect = 2e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 23 cagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccacgg 82
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 18 cagtggttttaccctatggtaggttacgtcaggctgttctaccacagggtagaaccacgg 77
Query: 83 acgggat 89
|| ||||
Sbjct: 78 acaggat 84
>34602_fru-mir-140:mirbase
Length = 67
Score = 117 bits (59), Expect = 2e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 21 gtcagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccac 80
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 1 gtcagtggttttaccctatggtaggtgacatcatgctgttctaccacagggtagaaccac 60
Query: 81 ggacggg 87
|||||||
Sbjct: 61 ggacggg 67
>34749_tni-mir-140:mirbase
Length = 67
Score = 117 bits (59), Expect = 2e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 21 gtcagtggttttaccctatggtaggttacgtcatgctgttctaccacagggtagaaccac 80
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 1 gtcagtggttttaccctatggtaggtgacatcatgctgttctaccacagggtagaaccac 60
Query: 81 ggacggg 87
|||||||
Sbjct: 61 ggacggg 67
>25493_pma-mir-140:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tcagtggttttaccctatggtag 44
|||||||||||||||||||||||
Sbjct: 9 tcagtggttttaccctatggtag 31
