miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34628_fru-mir-200a:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 4e-09
Identities = 53/60 (88%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 13 catcttacctgacagtgcttggctgttc-actgatgttctaacactgtctggtaacgatg 71
||||||||| ||||||||| | ||| | |||| ||||||||||||||||||||||||||
Sbjct: 11 catcttacccgacagtgctggattgtactactgttgttctaacactgtctggtaacgatg 70
>34775_tni-mir-200a:mirbase
Length = 62
Score = 56.0 bits (28), Expect = 4e-09
Identities = 53/60 (88%), Gaps = 1/60 (1%)
Strand = Plus / Plus
Query: 13 catcttacctgacagtgcttggctgttc-actgatgttctaacactgtctggtaacgatg 71
||||||||||||||||||| | | | | |||| ||||||||||||||||||||||||||
Sbjct: 1 catcttacctgacagtgctggattatactactgttgttctaacactgtctggtaacgatg 60
>25820_xtr-mir-200a:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 ttctaacactgtctggtaacgatg 71
||||||||||||||||||||||||
Sbjct: 50 ttctaacactgtctggtaacgatg 73
>25991_gga-mir-200a:mirbase
Length = 87
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 ttctaacactgtctggtaacgatg 71
||||||||||||||||||||||||
Sbjct: 49 ttctaacactgtctggtaacgatg 72
>34355_dre-mir-200a:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 48 ttctaacactgtctggtaacgatg 71
||||||||||||||||||||||||
Sbjct: 49 ttctaacactgtctggtaacgatg 72
>26498_tgu-mir-200a:mirbase
Length = 93
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||||||||
Sbjct: 59 tctaacactgtctggtaacgatg 81
>26759_cfa-mir-200a:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||||||||
Sbjct: 52 tctaacactgtctggtaacgatg 74
>27087_eca-mir-200a:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||||||||
Sbjct: 52 tctaacactgtctggtaacgatg 74
>27418_mdo-mir-200a:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||||||||
Sbjct: 49 tctaacactgtctggtaacgatg 71
>27798_mml-mir-200a:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||||||||
Sbjct: 52 tctaacactgtctggtaacgatg 74
>28518_hsa-mir-200a:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||||||||
Sbjct: 52 tctaacactgtctggtaacgatg 74
>30279_ptr-mir-200a:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||||||||
Sbjct: 51 tctaacactgtctggtaacgatg 73
>30897_ppy-mir-200a:mirbase
Length = 88
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||||||||
Sbjct: 52 tctaacactgtctggtaacgatg 74
>31528_oan-mir-200a:mirbase
Length = 114
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||||||||
Sbjct: 64 tctaacactgtctggtaacgatg 86
>31923_mmu-mir-200a:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||||||||
Sbjct: 52 tctaacactgtctggtaacgatg 74
>32788_rno-mir-200a:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||||||||
Sbjct: 52 tctaacactgtctggtaacgatg 74
>33035_rno-mir-3548:mirbase
Length = 120
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||||||||
Sbjct: 51 tctaacactgtctggtaacgatg 29
>33278_bta-mir-200a:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||||||||
Sbjct: 50 tctaacactgtctggtaacgatg 72
>24837_cin-mir-141:mirbase
Length = 75
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatgca 73
|||||||||||||||||| ||||||
Sbjct: 38 tctaacactgtctggtaaagatgca 62
>25328_csa-mir-141:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 48 ttctaacactgtctggtaacgatgc 72
||||||||||||||||||| |||||
Sbjct: 45 ttctaacactgtctggtaaagatgc 69
>27389_mdo-mir-141:mirbase
Length = 64
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 48 ttctaacactgtctggtaacgatgc 72
||||||||||||||||||| |||||
Sbjct: 38 ttctaacactgtctggtaaagatgc 62
>24694_bfl-mir-200c:mirbase
Length = 95
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 49 tctaacactgtctggtaacgatg 71
|||||||||||||||||| ||||
Sbjct: 56 tctaacactgtctggtaatgatg 78
>30097_ppa-mir-141:mirbase
Length = 95
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 50 ctaacactgtctggtaacgatgc 72
||||||||||||||||| |||||
Sbjct: 58 ctaacactgtctggtaaagatgc 80
