miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34312_dre-mir-142a:mirbase
Length = 91
Score = 180 bits (91), Expect = 1e-46
Identities = 91/91 (100%)
Strand = Plus / Plus
Query: 1 cgtacagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgtacagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagt 60
Query: 61 gtttcctactttatggatgagtgtactgttg 91
|||||||||||||||||||||||||||||||
Sbjct: 61 gtttcctactttatggatgagtgtactgttg 91
>34750_tni-mir-142a:mirbase
Length = 90
Score = 163 bits (82), Expect = 3e-41
Identities = 88/90 (97%)
Strand = Plus / Plus
Query: 2 gtacagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtg 61
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct: 1 gtacagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtg 60
Query: 62 tttcctactttatggatgagtgtactgttg 91
||||||||||||||||||||||||||||||
Sbjct: 61 tttcctactttatggatgagtgtactgttg 90
>34603_fru-mir-142a:mirbase
Length = 86
Score = 147 bits (74), Expect = 2e-36
Identities = 83/86 (96%)
Strand = Plus / Plus
Query: 4 acagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtt 63
||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct: 1 acagtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtt 60
Query: 64 tcctactttatggatgagtgtactgt 89
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>34313_dre-mir-142b:mirbase
Length = 86
Score = 115 bits (58), Expect = 6e-27
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 4 acagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtt 63
|||||||||||| ||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
Query: 64 tcctactttatggatgagtgtactgt 89
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>25962_gga-mir-142:mirbase
Length = 88
Score = 107 bits (54), Expect = 1e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 4 acagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtt 63
|||||||||||| |||||||||||||||||||||||||| | | || ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtt 61
Query: 64 tcctactttatggatgagtgtactgt 89
||||||||||||||||||||||||||
Sbjct: 62 tcctactttatggatgagtgtactgt 87
>25963_gga-mir-142:mirbase
Length = 88
Score = 107 bits (54), Expect = 1e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 4 acagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtt 63
|||||||||||| |||||||||||||||||||||||||| | | || ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtt 61
Query: 64 tcctactttatggatgagtgtactgt 89
||||||||||||||||||||||||||
Sbjct: 62 tcctactttatggatgagtgtactgt 87
>34604_fru-mir-142b:mirbase
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 4 acagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtt 63
||||||| |||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 1 acagtgctgtcacccataaagtagaaagcactactaaactattctacacagtgtagtgtt 60
Query: 64 tcctactttatggatgagtgtactgt 89
|||||||||||||||||||| |||||
Sbjct: 61 tcctactttatggatgagtgcactgt 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 4 acagtgcagtcatccataaagtagaaagcactac 37
|||||||| ||||||||||||||| || ||||||
Sbjct: 86 acagtgcactcatccataaagtaggaaacactac 53
>34751_tni-mir-142b:mirbase
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 4 acagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtt 63
||||||| |||| |||||||||||||||||||||||||| || ||||||||||||||
Sbjct: 1 acagtgctgtcacccataaagtagaaagcactactaaacgtctttacacagtgtagtgtt 60
Query: 64 tcctactttatggatgagtgtactgt 89
|||||||||||||||||||| |||||
Sbjct: 61 tcctactttatggatgagtgcactgt 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 4 acagtgcagtcatccataaagtagaaagcactac 37
|||||||| ||||||||||||||| || ||||||
Sbjct: 86 acagtgcactcatccataaagtaggaaacactac 53
>31499_oan-mir-142:mirbase
Length = 110
Score = 91.7 bits (46), Expect = 8e-20
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 4 acagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtt 63
||||||||||||||||||||||||||||||||||| ||| | | | ||||||||||
Sbjct: 15 acagtgcagtcatccataaagtagaaagcactact-aacagcgctgtagggtgtagtgtt 73
Query: 64 tcctactttatggatgagtgtactgt 89
||||||||||||||||||||||||||
Sbjct: 74 tcctactttatggatgagtgtactgt 99
>27746_mml-mir-142:mirbase
Length = 87
Score = 87.7 bits (44), Expect = 1e-18
Identities = 78/87 (89%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 4 acagtgcagtcatccataaagtagaaagcactactaa-acccctcgccacagtgtagtgt 62
|||||||||||| |||||||||||||||||||||||| | | || | | |||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg--agggtgtagtgt 59
Query: 63 ttcctactttatggatgagtgtactgt 89
|||||||||||||||||||||||||||
Sbjct: 60 ttcctactttatggatgagtgtactgt 86
>27747_mml-mir-142:mirbase
Length = 87
Score = 87.7 bits (44), Expect = 1e-18
Identities = 78/87 (89%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 4 acagtgcagtcatccataaagtagaaagcactactaa-acccctcgccacagtgtagtgt 62
|||||||||||| |||||||||||||||||||||||| | | || | | |||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg--agggtgtagtgt 59
Query: 63 ttcctactttatggatgagtgtactgt 89
|||||||||||||||||||||||||||
Sbjct: 60 ttcctactttatggatgagtgtactgt 86
>28461_hsa-mir-142:mirbase
Length = 87
Score = 87.7 bits (44), Expect = 1e-18
Identities = 78/87 (89%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 4 acagtgcagtcatccataaagtagaaagcactactaa-acccctcgccacagtgtagtgt 62
|||||||||||| |||||||||||||||||||||||| | | || | | |||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg--agggtgtagtgt 59
Query: 63 ttcctactttatggatgagtgtactgt 89
|||||||||||||||||||||||||||
Sbjct: 60 ttcctactttatggatgagtgtactgt 86
>28462_hsa-mir-142:mirbase
Length = 87
Score = 87.7 bits (44), Expect = 1e-18
Identities = 78/87 (89%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 4 acagtgcagtcatccataaagtagaaagcactactaa-acccctcgccacagtgtagtgt 62
|||||||||||| |||||||||||||||||||||||| | | || | | |||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg--agggtgtagtgt 59
Query: 63 ttcctactttatggatgagtgtactgt 89
|||||||||||||||||||||||||||
Sbjct: 60 ttcctactttatggatgagtgtactgt 86
>30234_ptr-mir-142:mirbase
Length = 86
Score = 87.7 bits (44), Expect = 1e-18
Identities = 78/87 (89%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 4 acagtgcagtcatccataaagtagaaagcactactaa-acccctcgccacagtgtagtgt 62
|||||||||||| |||||||||||||||||||||||| | | || | | |||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg--agggtgtagtgt 59
Query: 63 ttcctactttatggatgagtgtactgt 89
|||||||||||||||||||||||||||
Sbjct: 60 ttcctactttatggatgagtgtactgt 86
>30845_ppy-mir-142:mirbase
Length = 87
Score = 87.7 bits (44), Expect = 1e-18
Identities = 78/87 (89%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 4 acagtgcagtcatccataaagtagaaagcactactaa-acccctcgccacagtgtagtgt 62
|||||||||||| |||||||||||||||||||||||| | | || | | |||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg--agggtgtagtgt 59
Query: 63 ttcctactttatggatgagtgtactgt 89
|||||||||||||||||||||||||||
Sbjct: 60 ttcctactttatggatgagtgtactgt 86
>30846_ppy-mir-142:mirbase
Length = 87
Score = 87.7 bits (44), Expect = 1e-18
Identities = 78/87 (89%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 4 acagtgcagtcatccataaagtagaaagcactactaa-acccctcgccacagtgtagtgt 62
|||||||||||| |||||||||||||||||||||||| | | || | | |||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg--agggtgtagtgt 59
Query: 63 ttcctactttatggatgagtgtactgt 89
|||||||||||||||||||||||||||
Sbjct: 60 ttcctactttatggatgagtgtactgt 86
>32747_rno-mir-142:mirbase
Length = 87
Score = 87.7 bits (44), Expect = 1e-18
Identities = 78/87 (89%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 4 acagtgcagtcatccataaagtagaaagcactactaa-acccctcgccacagtgtagtgt 62
|||||||||||| |||||||||||||||||||||||| | | || | | |||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg--agggtgtagtgt 59
Query: 63 ttcctactttatggatgagtgtactgt 89
|||||||||||||||||||||||||||
Sbjct: 60 ttcctactttatggatgagtgtactgt 86
>32748_rno-mir-142:mirbase
Length = 87
Score = 87.7 bits (44), Expect = 1e-18
Identities = 78/87 (89%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 4 acagtgcagtcatccataaagtagaaagcactactaa-acccctcgccacagtgtagtgt 62
|||||||||||| |||||||||||||||||||||||| | | || | | |||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg--agggtgtagtgt 59
Query: 63 ttcctactttatggatgagtgtactgt 89
|||||||||||||||||||||||||||
Sbjct: 60 ttcctactttatggatgagtgtactgt 86
>33228_bta-mir-142:mirbase
Length = 87
Score = 87.7 bits (44), Expect = 1e-18
Identities = 78/87 (89%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 4 acagtgcagtcatccataaagtagaaagcactactaa-acccctcgccacagtgtagtgt 62
|||||||||||| |||||||||||||||||||||||| | | || | | |||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaacagcactgg--agggtgtagtgt 59
Query: 63 ttcctactttatggatgagtgtactgt 89
|||||||||||||||||||||||||||
Sbjct: 60 ttcctactttatggatgagtgtactgt 86
>26473_tgu-mir-142:mirbase
Length = 71
Score = 77.8 bits (39), Expect = 1e-15
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 8 tgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtttcct 67
|||||||| |||||||||||||||||||||||||| | | || ||||||||||||||
Sbjct: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
Query: 68 actttatggat 78
|||||||||||
Sbjct: 61 actttatggat 71
>33991_ssc-mir-142:mirbase
Length = 80
Score = 77.8 bits (39), Expect = 1e-15
Identities = 73/82 (89%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 7 gtgcagtcatccataaagtagaaagcactactaa-acccctcgccacagtgtagtgtttc 65
||||||||| |||||||||||||||||||||||| | | || | | ||||||||||||
Sbjct: 1 gtgcagtcacccataaagtagaaagcactactaacagcactgg--agggtgtagtgtttc 58
Query: 66 ctactttatggatgagtgtact 87
||||||||||||||||||||||
Sbjct: 59 ctactttatggatgagtgtact 80
>33992_ssc-mir-142:mirbase
Length = 80
Score = 77.8 bits (39), Expect = 1e-15
Identities = 73/82 (89%), Gaps = 3/82 (3%)
Strand = Plus / Plus
Query: 7 gtgcagtcatccataaagtagaaagcactactaa-acccctcgccacagtgtagtgtttc 65
||||||||| |||||||||||||||||||||||| | | || | | ||||||||||||
Sbjct: 1 gtgcagtcacccataaagtagaaagcactactaacagcactgg--agggtgtagtgtttc 58
Query: 66 ctactttatggatgagtgtact 87
||||||||||||||||||||||
Sbjct: 59 ctactttatggatgagtgtact 80
>25666_xla-mir-142:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 5 cagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgttt 64
|||||||| || ||||||||||||||||||||||| || | || ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 65 cctactttatggatgagtgtactg 88
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>25788_xtr-mir-142-1:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 5 cagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgttt 64
|||||||| || ||||||||||||||||||||||| || | || ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 65 cctactttatggatgagtgtactg 88
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>25789_xtr-mir-142-1:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 5 cagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgttt 64
|||||||| || ||||||||||||||||||||||| || | || ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 65 cctactttatggatgagtgtactg 88
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>25790_xtr-mir-142-2:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 5 cagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgttt 64
|||||||| || ||||||||||||||||||||||| || | || ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 65 cctactttatggatgagtgtactg 88
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>25791_xtr-mir-142-2:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 5 cagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgttt 64
|||||||| || ||||||||||||||||||||||| || | || ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 65 cctactttatggatgagtgtactg 88
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>27390_mdo-mir-142:mirbase
Length = 74
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 54 gtgtagtgtttcctactttatggatgagtg 83
||||||||||||||||||||||||||||||
Sbjct: 45 gtgtagtgtttcctactttatggatgagtg 74
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 9 gcagtcatccataaagtagaaagcactactaa 40
||||||| ||||||||||||||||||||||||
Sbjct: 1 gcagtcacccataaagtagaaagcactactaa 32
>26716_cfa-mir-142:mirbase
Length = 63
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 54 gtgtagtgtttcctactttatggatg 79
||||||||||||||||||||||||||
Sbjct: 38 gtgtagtgtttcctactttatggatg 63
>27041_eca-mir-142:mirbase
Length = 64
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 54 gtgtagtgtttcctactttatggatg 79
||||||||||||||||||||||||||
Sbjct: 39 gtgtagtgtttcctactttatggatg 64
>27042_eca-mir-142:mirbase
Length = 64
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 54 gtgtagtgtttcctactttatggatg 79
||||||||||||||||||||||||||
Sbjct: 39 gtgtagtgtttcctactttatggatg 64
>31874_mmu-mir-142:mirbase
Length = 64
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 54 gtgtagtgtttcctactttatggatg 79
||||||||||||||||||||||||||
Sbjct: 39 gtgtagtgtttcctactttatggatg 64
>31875_mmu-mir-142:mirbase
Length = 64
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 54 gtgtagtgtttcctactttatggatg 79
||||||||||||||||||||||||||
Sbjct: 39 gtgtagtgtttcctactttatggatg 64
