miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34604_fru-mir-142b:mirbase
Length = 86
Score = 123 bits (62), Expect = 2e-29
Identities = 80/86 (93%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
||||||| ||||| ||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct: 1 acagtgctgtcacccataaagtagaaagcactactaaactattctacacagtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
|||||||||||||||||||| |||||
Sbjct: 61 tcctactttatggatgagtgcactgt 86
>34751_tni-mir-142b:mirbase
Length = 86
Score = 123 bits (62), Expect = 2e-29
Identities = 80/86 (93%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
||||||| ||||| ||||||||||| ||||||||||||| ||| ||||||||||||||||
Sbjct: 1 acagtgctgtcacccataaagtagaaagcactactaaacgtctttacacagtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
|||||||||||||||||||| |||||
Sbjct: 61 tcctactttatggatgagtgcactgt 86
>34311_dre-mir-142a:mirbase
Length = 91
Score = 115 bits (58), Expect = 5e-27
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
|||||||||||| ||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct: 4 acagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtt 63
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 64 tcctactttatggatgagtgtactgt 89
>34312_dre-mir-142a:mirbase
Length = 91
Score = 115 bits (58), Expect = 5e-27
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
|||||||||||| ||||||||||| ||||||||||||| ||| ||||||||||||||
Sbjct: 4 acagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtt 63
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 64 tcctactttatggatgagtgtactgt 89
>34750_tni-mir-142a:mirbase
Length = 90
Score = 115 bits (58), Expect = 5e-27
Identities = 79/86 (91%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
|||||||||||| ||||||||||| |||||||||||||| || ||||||||||||||
Sbjct: 3 acagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtt 62
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 63 tcctactttatggatgagtgtactgt 88
>25962_gga-mir-142:mirbase
Length = 88
Score = 107 bits (54), Expect = 1e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
||||||||||||| ||||||||||| ||||||||||||| | || || ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtt 61
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 62 tcctactttatggatgagtgtactgt 87
>25963_gga-mir-142:mirbase
Length = 88
Score = 107 bits (54), Expect = 1e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
||||||||||||| ||||||||||| ||||||||||||| | || || ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtt 61
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 62 tcctactttatggatgagtgtactgt 87
>34603_fru-mir-142a:mirbase
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
|||||||||||| ||||||||||| |||||||||||||| | ||||||||||||||
Sbjct: 1 acagtgcagtcatccataaagtagaaagcactactaaactctttgccacagtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>27746_mml-mir-142:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
||||||||||||| ||||||||||| ||||||||||| | | || | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>27747_mml-mir-142:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
||||||||||||| ||||||||||| ||||||||||| | | || | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>28461_hsa-mir-142:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
||||||||||||| ||||||||||| ||||||||||| | | || | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>28462_hsa-mir-142:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
||||||||||||| ||||||||||| ||||||||||| | | || | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>30234_ptr-mir-142:mirbase
Length = 86
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
||||||||||||| ||||||||||| ||||||||||| | | || | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>30845_ppy-mir-142:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
||||||||||||| ||||||||||| ||||||||||| | | || | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>30846_ppy-mir-142:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
||||||||||||| ||||||||||| ||||||||||| | | || | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>32747_rno-mir-142:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
||||||||||||| ||||||||||| ||||||||||| | | || | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>32748_rno-mir-142:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
||||||||||||| ||||||||||| ||||||||||| | | || | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>33228_bta-mir-142:mirbase
Length = 87
Score = 83.8 bits (42), Expect = 2e-17
Identities = 76/86 (88%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
||||||||||||| ||||||||||| ||||||||||| | | || | ||||||||||
Sbjct: 2 acagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtt 60
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>26473_tgu-mir-142:mirbase
Length = 71
Score = 77.8 bits (39), Expect = 1e-15
Identities = 63/71 (88%)
Strand = Plus / Plus
Query: 5 tgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtttcct 64
||||||||| ||||||||||| ||||||||||||| | || || ||||||||||||||
Sbjct: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
Query: 65 actttatggat 75
|||||||||||
Sbjct: 61 actttatggat 71
>31499_oan-mir-142:mirbase
Length = 110
Score = 75.8 bits (38), Expect = 4e-15
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
|||||||||||| ||||||||||| ||||||||||| | | || | ||||||||||
Sbjct: 15 acagtgcagtcatccataaagtagaaagcactactaa-cagcgctgtagggtgtagtgtt 73
Query: 61 tcctactttatggatgagtgtactgt 86
||||||||||||||||||||||||||
Sbjct: 74 tcctactttatggatgagtgtactgt 99
>33991_ssc-mir-142:mirbase
Length = 80
Score = 73.8 bits (37), Expect = 2e-14
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 4 gtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtttcc 63
|||||||||| ||||||||||| ||||||||||| | | || | |||||||||||||
Sbjct: 1 gtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcc 59
Query: 64 tactttatggatgagtgtact 84
|||||||||||||||||||||
Sbjct: 60 tactttatggatgagtgtact 80
>33992_ssc-mir-142:mirbase
Length = 80
Score = 73.8 bits (37), Expect = 2e-14
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 4 gtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtttcc 63
|||||||||| ||||||||||| ||||||||||| | | || | |||||||||||||
Sbjct: 1 gtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcc 59
Query: 64 tactttatggatgagtgtact 84
|||||||||||||||||||||
Sbjct: 60 tactttatggatgagtgtact 80
>25666_xla-mir-142:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 2 cagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgttt 61
|||||||| ||| ||||||||||| |||||||||| || || || ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 62 cctactttatggatgagtgtactg 85
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>25788_xtr-mir-142-1:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 2 cagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgttt 61
|||||||| ||| ||||||||||| |||||||||| || || || ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 62 cctactttatggatgagtgtactg 85
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>25789_xtr-mir-142-1:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 2 cagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgttt 61
|||||||| ||| ||||||||||| |||||||||| || || || ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 62 cctactttatggatgagtgtactg 85
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>25790_xtr-mir-142-2:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 2 cagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgttt 61
|||||||| ||| ||||||||||| |||||||||| || || || ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 62 cctactttatggatgagtgtactg 85
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>25791_xtr-mir-142-2:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 2 cagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgttt 61
|||||||| ||| ||||||||||| |||||||||| || || || ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 62 cctactttatggatgagtgtactg 85
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>27390_mdo-mir-142:mirbase
Length = 74
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 51 gtgtagtgtttcctactttatggatgagtg 80
||||||||||||||||||||||||||||||
Sbjct: 45 gtgtagtgtttcctactttatggatgagtg 74
>26716_cfa-mir-142:mirbase
Length = 63
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 gtgtagtgtttcctactttatggatg 76
||||||||||||||||||||||||||
Sbjct: 38 gtgtagtgtttcctactttatggatg 63
>27041_eca-mir-142:mirbase
Length = 64
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 gtgtagtgtttcctactttatggatg 76
||||||||||||||||||||||||||
Sbjct: 39 gtgtagtgtttcctactttatggatg 64
>27042_eca-mir-142:mirbase
Length = 64
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 gtgtagtgtttcctactttatggatg 76
||||||||||||||||||||||||||
Sbjct: 39 gtgtagtgtttcctactttatggatg 64
>31874_mmu-mir-142:mirbase
Length = 64
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 gtgtagtgtttcctactttatggatg 76
||||||||||||||||||||||||||
Sbjct: 39 gtgtagtgtttcctactttatggatg 64
>31875_mmu-mir-142:mirbase
Length = 64
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 51 gtgtagtgtttcctactttatggatg 76
||||||||||||||||||||||||||
Sbjct: 39 gtgtagtgtttcctactttatggatg 64
