miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34314_dre-mir-143-1:mirbase
Length = 99
Score = 196 bits (99), Expect = 2e-51
Identities = 99/99 (100%)
Strand = Plus / Plus
Query: 1 gatctacagtcgtctggcccgcggtgcagtgctgcatctctggtcaactgggagtctgag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatctacagtcgtctggcccgcggtgcagtgctgcatctctggtcaactgggagtctgag 60
Query: 61 atgaagcactgtagctcgggaggacaacactgtcagctc 99
|||||||||||||||||||||||||||||||||||||||
Sbjct: 61 atgaagcactgtagctcgggaggacaacactgtcagctc 99
>33993_ssc-mir-143:mirbase
Length = 80
Score = 109 bits (55), Expect = 4e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctcggga 81
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 15 ggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtagctcggga 73
>33994_ssc-mir-143:mirbase
Length = 80
Score = 109 bits (55), Expect = 4e-25
Identities = 58/59 (98%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctcggga 81
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 15 ggtgcagtgctgcatctctggtcagctgggagtctgagatgaagcactgtagctcggga 73
>33229_bta-mir-143:mirbase
Length = 101
Score = 101 bits (51), Expect = 9e-23
Identities = 57/59 (96%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctcggga 81
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 22 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctcggga 80
>27043_eca-mir-143:mirbase
Length = 64
Score = 97.6 bits (49), Expect = 1e-21
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 17 gcccgcggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagct 76
||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 gcccgaggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagct 60
Query: 77 c 77
|
Sbjct: 61 c 61
>25792_xtr-mir-143:mirbase
Length = 83
Score = 93.7 bits (47), Expect = 2e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctcggga 81
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 16 ggtgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgtagctcggga 74
>26717_cfa-mir-143:mirbase
Length = 55
Score = 93.7 bits (47), Expect = 2e-20
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctc 77
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 1 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 55
>27391_mdo-mir-143:mirbase
Length = 63
Score = 93.7 bits (47), Expect = 2e-20
Identities = 59/63 (93%)
Strand = Plus / Plus
Query: 18 cccgcggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctc 77
|||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct: 1 cccgaggtgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgtagctc 60
Query: 78 ggg 80
|||
Sbjct: 61 ggg 63
>27577_lla-mir-143:mirbase
Length = 106
Score = 93.7 bits (47), Expect = 2e-20
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctc 77
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
>27748_mml-mir-143:mirbase
Length = 106
Score = 93.7 bits (47), Expect = 2e-20
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctc 77
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
>28309_ggo-mir-143:mirbase
Length = 106
Score = 93.7 bits (47), Expect = 2e-20
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctc 77
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
>28463_hsa-mir-143:mirbase
Length = 106
Score = 93.7 bits (47), Expect = 2e-20
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctc 77
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
>30098_ppa-mir-143:mirbase
Length = 106
Score = 93.7 bits (47), Expect = 2e-20
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctc 77
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
>30235_ptr-mir-143:mirbase
Length = 106
Score = 93.7 bits (47), Expect = 2e-20
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctc 77
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
>30847_ppy-mir-143:mirbase
Length = 106
Score = 93.7 bits (47), Expect = 2e-20
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctc 77
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 27 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 81
>31500_oan-mir-143:mirbase
Length = 90
Score = 93.7 bits (47), Expect = 2e-20
Identities = 56/59 (94%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctcggga 81
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct: 18 ggtgcagtgctgcatctctggtcagttgtgagtctgagatgaagcactgtagctcggga 76
>31876_mmu-mir-143:mirbase
Length = 63
Score = 93.7 bits (47), Expect = 2e-20
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctc 77
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 6 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 60
>32749_rno-mir-143:mirbase
Length = 105
Score = 93.7 bits (47), Expect = 2e-20
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 23 ggtgcagtgctgcatctctggtcaactgggagtctgagatgaagcactgtagctc 77
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 26 ggtgcagtgctgcatctctggtcagttgggagtctgagatgaagcactgtagctc 80
>25494_pma-mir-143:mirbase
Length = 70
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 52 gagtctgagatgaagcactgta 73
||||||||||||||||||||||
Sbjct: 39 gagtctgagatgaagcactgta 60
