miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25794_xtr-mir-145:mirbase
Length = 86
Score = 63.9 bits (32), Expect = 2e-11
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 29 ggtccagttttcccaggaatcccttgggcaatcgaaagggggattcctggaaatactgtt 88
|||||||||||||||||||||||||||| | | ||||||||||||||||||||||
Sbjct: 14 ggtccagttttcccaggaatcccttgggtgct-gtggtggggattcctggaaatactgtt 72
Query: 89 cttggggt 96
||||||||
Sbjct: 73 cttggggt 80
>31878_mmu-mir-145:mirbase
Length = 70
Score = 60.0 bits (30), Expect = 4e-10
Identities = 58/65 (89%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 29 ggtccagttttcccaggaatcccttgggcaatcgaa-agggggattcctggaaatactgt 87
||||||||||||||||||||||||||| | | || | |||||||||||||||||||||
Sbjct: 6 ggtccagttttcccaggaatcccttgg--atgctaagatggggattcctggaaatactgt 63
Query: 88 tcttg 92
|||||
Sbjct: 64 tcttg 68
>32751_rno-mir-145:mirbase
Length = 88
Score = 60.0 bits (30), Expect = 4e-10
Identities = 58/65 (89%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 29 ggtccagttttcccaggaatcccttgggcaatcgaa-agggggattcctggaaatactgt 87
||||||||||||||||||||||||||| | | || | |||||||||||||||||||||
Sbjct: 15 ggtccagttttcccaggaatcccttgg--atgctaagatggggattcctggaaatactgt 72
Query: 88 tcttg 92
|||||
Sbjct: 73 tcttg 77
>33995_ssc-mir-145:mirbase
Length = 86
Score = 56.0 bits (28), Expect = 6e-09
Identities = 56/64 (87%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 29 ggtccagttttcccaggaatcccttgggcaatcgaaagggggattcctggaaatactgtt 88
||||||||||||||||||||||||| | | || | ||||||||||||||||||||||
Sbjct: 15 ggtccagttttcccaggaatcccttagatgct-gagatggggattcctggaaatactgtt 73
Query: 89 cttg 92
||||
Sbjct: 74 cttg 77
>27393_mdo-mir-145:mirbase
Length = 70
Score = 54.0 bits (27), Expect = 2e-08
Identities = 58/66 (87%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 28 gggtccagttttcccaggaatcccttgggcaatcgaa-agggggattcctggaaatactg 86
|||||||||||||||||||||||||| | | | || | ||||||||||||||||||||
Sbjct: 5 gggtccagttttcccaggaatcccttag--atgctaagatggggattcctggaaatactg 62
Query: 87 ttcttg 92
||||||
Sbjct: 63 ttcttg 68
>26719_cfa-mir-145:mirbase
Length = 83
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 ggggattcctggaaatactgttcttg 92
||||||||||||||||||||||||||
Sbjct: 47 ggggattcctggaaatactgttcttg 72
>27045_eca-mir-145:mirbase
Length = 70
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 ggggattcctggaaatactgttcttg 92
||||||||||||||||||||||||||
Sbjct: 43 ggggattcctggaaatactgttcttg 68
>27750_mml-mir-145:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 ggggattcctggaaatactgttcttg 92
||||||||||||||||||||||||||
Sbjct: 52 ggggattcctggaaatactgttcttg 77
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 29 ggtccagttttcccaggaatccctt 53
|||||||||||||||||||||||||
Sbjct: 15 ggtccagttttcccaggaatccctt 39
>28216_mne-mir-145:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 ggggattcctggaaatactgttcttg 92
||||||||||||||||||||||||||
Sbjct: 52 ggggattcctggaaatactgttcttg 77
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 29 ggtccagttttcccaggaatccctt 53
|||||||||||||||||||||||||
Sbjct: 15 ggtccagttttcccaggaatccctt 39
>28310_ggo-mir-145:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 ggggattcctggaaatactgttcttg 92
||||||||||||||||||||||||||
Sbjct: 52 ggggattcctggaaatactgttcttg 77
>28465_hsa-mir-145:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 ggggattcctggaaatactgttcttg 92
||||||||||||||||||||||||||
Sbjct: 52 ggggattcctggaaatactgttcttg 77
>30237_ptr-mir-145:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 ggggattcctggaaatactgttcttg 92
||||||||||||||||||||||||||
Sbjct: 52 ggggattcctggaaatactgttcttg 77
>30849_ppy-mir-145:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 ggggattcctggaaatactgttcttg 92
||||||||||||||||||||||||||
Sbjct: 52 ggggattcctggaaatactgttcttg 77
>31502_oan-mir-145:mirbase
Length = 98
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 ggggattcctggaaatactgttcttg 92
||||||||||||||||||||||||||
Sbjct: 53 ggggattcctggaaatactgttcttg 78
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 29 ggtccagttttcccaggaat 48
||||||||||||||||||||
Sbjct: 17 ggtccagttttcccaggaat 36
>33231_bta-mir-145:mirbase
Length = 88
Score = 52.0 bits (26), Expect = 9e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 67 ggggattcctggaaatactgttcttg 92
||||||||||||||||||||||||||
Sbjct: 52 ggggattcctggaaatactgttcttg 77
>25496_pma-mir-145:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 ggtccagttttcccaggaatccct 52
||||||||||||||||||||||||
Sbjct: 12 ggtccagttttcccaggaatccct 35
