miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34606_fru-mir-148:mirbase
Length = 79
Score = 85.7 bits (43), Expect = 4e-18
Identities = 70/79 (88%)
Strand = Plus / Plus
Query: 1 ctttccaagtaaagttctgtgatacactccgactctgaatgtttgcagtcagtgcattac 60
|||||||| ||||||||||||||||||| |||||| | | ||||||||||||||||
Sbjct: 1 ctttccaaataaagttctgtgatacacttagactctagttcctcgcagtcagtgcattac 60
Query: 61 agaactttgttttgggagt 79
|||||||||||||||||||
Sbjct: 61 agaactttgttttgggagt 79
>34753_tni-mir-148:mirbase
Length = 66
Score = 85.7 bits (43), Expect = 4e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 10 taaagttctgtgatacactccgactctgaatgtttgcagtcagtgcattacagaactttg 69
||||||||||||||||||| ||||||||| | | |||||||||||||||||||||||||
Sbjct: 4 taaagttctgtgatacacttcgactctgattcctcgcagtcagtgcattacagaactttg 63
Query: 70 ttt 72
|||
Sbjct: 64 ttt 66
>25797_xtr-mir-148a:mirbase
Length = 86
Score = 61.9 bits (31), Expect = 6e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 45 gcagtcagtgcattacagaactttgttttgggagt 79
|||||||||||| ||||||||||||||||||||||
Sbjct: 49 gcagtcagtgcactacagaactttgttttgggagt 83
>34607_fru-mir-152:mirbase
Length = 71
Score = 54.0 bits (27), Expect = 1e-08
Identities = 55/62 (88%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 12 aagttctgtgatacactccgactctgaatgttt--gc-agtcagtgcattacagaacttt 68
|||||||||||||||||| |||| ||||||| | || ||||||||||| ||||||||||
Sbjct: 5 aagttctgtgatacactctgactgtgaatgtctatgctagtcagtgcataacagaacttt 64
Query: 69 gt 70
||
Sbjct: 65 gt 66
>34754_tni-mir-152:mirbase
Length = 85
Score = 54.0 bits (27), Expect = 1e-08
Identities = 55/62 (88%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 12 aagttctgtgatacactccgactctgaatg--tttgc-agtcagtgcattacagaacttt 68
|||||||||||||||||| |||| |||||| | ||| ||||||||||| ||||||||||
Sbjct: 19 aagttctgtgatacactctgactgtgaatggctatgctagtcagtgcataacagaacttt 78
Query: 69 gt 70
||
Sbjct: 79 gt 80
>30247_ptr-mir-152:mirbase
Length = 86
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 aagttctgtgatacactccgactc 35
||||||||||||||||||||||||
Sbjct: 15 aagttctgtgatacactccgactc 38
>34323_dre-mir-152:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 12 aagttctgtgatacactccgactctgaat-gtttgcagtcagtgcattacagaactttg 69
|||||||||||||||||| |||| ||||| | | ||||||||||| |||||||||||
Sbjct: 16 aagttctgtgatacactcagactttgaatcagtggtagtcagtgcatgacagaactttg 74
>25971_gga-mir-148a:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 gcagtcagtgcattacagaactttgt 70
|||||||||||| |||||||||||||
Sbjct: 40 gcagtcagtgcactacagaactttgt 65
>26479_tgu-mir-148:mirbase
Length = 112
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 gcagtcagtgcattacagaactttgt 70
|||||||||||| |||||||||||||
Sbjct: 77 gcagtcagtgcactacagaactttgt 102
>26558_tgu-mir-2957:mirbase
Length = 74
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 45 gcagtcagtgcattacagaactttgt 70
|||||||||||| |||||||||||||
Sbjct: 32 gcagtcagtgcactacagaactttgt 7
>26723_cfa-mir-148a:mirbase
Length = 60
Score = 44.1 bits (22), Expect = 1e-05
Identities = 43/49 (87%), Gaps = 2/49 (4%)
Strand = Plus / Plus
Query: 24 acactccgactctgaatgt--ttgcagtcagtgcattacagaactttgt 70
||||||||||||||||| | | | |||||||||| |||||||||||||
Sbjct: 12 acactccgactctgaatatgatagaagtcagtgcactacagaactttgt 60
>26728_cfa-mir-152:mirbase
Length = 59
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 gttctgtgatacactccgactc 35
||||||||||||||||||||||
Sbjct: 3 gttctgtgatacactccgactc 24
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 45 gcagtcagtgcattacagaactt 67
||||||||||||| |||||||||
Sbjct: 35 gcagtcagtgcatgacagaactt 57
>27050_eca-mir-148a:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 43/49 (87%), Gaps = 2/49 (4%)
Strand = Plus / Plus
Query: 24 acactccgactctgaatgt--ttgcagtcagtgcattacagaactttgt 70
||||||||||||||||| | | | |||||||||| |||||||||||||
Sbjct: 17 acactccgactctgaatatgatagaagtcagtgcactacagaactttgt 65
>27756_mml-mir-148a:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 43/49 (87%), Gaps = 2/49 (4%)
Strand = Plus / Plus
Query: 24 acactccgactctga--atgtttgcagtcagtgcattacagaactttgt 70
||||||||||||||| ||| | | |||||||||| |||||||||||||
Sbjct: 17 acactccgactctgagtatgatagaagtcagtgcactacagaactttgt 65
>27762_mml-mir-152:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 gttctgtgatacactccgactc 35
||||||||||||||||||||||
Sbjct: 18 gttctgtgatacactccgactc 39
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 45 gcagtcagtgcattacagaactt 67
||||||||||||| |||||||||
Sbjct: 50 gcagtcagtgcatgacagaactt 72
>28471_hsa-mir-148a:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 43/49 (87%), Gaps = 2/49 (4%)
Strand = Plus / Plus
Query: 24 acactccgactctga--atgtttgcagtcagtgcattacagaactttgt 70
||||||||||||||| ||| | | |||||||||| |||||||||||||
Sbjct: 17 acactccgactctgagtatgatagaagtcagtgcactacagaactttgt 65
>28478_hsa-mir-152:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 gttctgtgatacactccgactc 35
||||||||||||||||||||||
Sbjct: 18 gttctgtgatacactccgactc 39
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 45 gcagtcagtgcattacagaactt 67
||||||||||||| |||||||||
Sbjct: 50 gcagtcagtgcatgacagaactt 72
>30242_ptr-mir-148a:mirbase
Length = 67
Score = 44.1 bits (22), Expect = 1e-05
Identities = 43/49 (87%), Gaps = 2/49 (4%)
Strand = Plus / Plus
Query: 24 acactccgactctga--atgtttgcagtcagtgcattacagaactttgt 70
||||||||||||||| ||| | | |||||||||| |||||||||||||
Sbjct: 17 acactccgactctgagtatgatagaagtcagtgcactacagaactttgt 65
>30855_ppy-mir-148a:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 43/49 (87%), Gaps = 2/49 (4%)
Strand = Plus / Plus
Query: 24 acactccgactctga--atgtttgcagtcagtgcattacagaactttgt 70
||||||||||||||| ||| | | |||||||||| |||||||||||||
Sbjct: 17 acactccgactctgagtatgatagaagtcagtgcactacagaactttgt 65
>31882_mmu-mir-148a:mirbase
Length = 99
Score = 44.1 bits (22), Expect = 1e-05
Identities = 43/49 (87%), Gaps = 2/49 (4%)
Strand = Plus / Plus
Query: 24 acactccgactctga--atgtttgcagtcagtgcattacagaactttgt 70
||||||||||||||| ||| | | |||||||||| |||||||||||||
Sbjct: 34 acactccgactctgagtatgatagaagtcagtgcactacagaactttgt 82
>31888_mmu-mir-152:mirbase
Length = 73
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 gttctgtgatacactccgactc 35
||||||||||||||||||||||
Sbjct: 11 gttctgtgatacactccgactc 32
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 45 gcagtcagtgcattacagaactt 67
||||||||||||| |||||||||
Sbjct: 43 gcagtcagtgcatgacagaactt 65
>32759_rno-mir-152:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 gttctgtgatacactccgactc 35
||||||||||||||||||||||
Sbjct: 17 gttctgtgatacactccgactc 38
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 45 gcagtcagtgcattacagaactt 67
||||||||||||| |||||||||
Sbjct: 49 gcagtcagtgcatgacagaactt 71
>33235_bta-mir-148a:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 43/49 (87%), Gaps = 2/49 (4%)
Strand = Plus / Plus
Query: 24 acactccgactctgaatgt--ttgcagtcagtgcattacagaactttgt 70
||||||||||||||||| | | | |||||||||| |||||||||||||
Sbjct: 17 acactccgactctgaatatgatagaagtcagtgcactacagaactttgt 65
>33239_bta-mir-152:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 gttctgtgatacactccgactc 35
||||||||||||||||||||||
Sbjct: 17 gttctgtgatacactccgactc 38
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 45 gcagtcagtgcattacagaactt 67
||||||||||||| |||||||||
Sbjct: 49 gcagtcagtgcatgacagaactt 71
>33784_bta-mir-2957:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 14 gttctgtgatacactccgactc 35
||||||||||||||||||||||
Sbjct: 62 gttctgtgatacactccgactc 41
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 45 gcagtcagtgcattacagaactt 67
||||||||||||| |||||||||
Sbjct: 30 gcagtcagtgcatgacagaactt 8
>33998_ssc-mir-148a:mirbase
Length = 68
Score = 44.1 bits (22), Expect = 1e-05
Identities = 43/49 (87%), Gaps = 2/49 (4%)
Strand = Plus / Plus
Query: 24 acactccgactctgaatgt--ttgcagtcagtgcattacagaactttgt 70
||||||||||||||||| | | | |||||||||| |||||||||||||
Sbjct: 17 acactccgactctgaatatgatagaagtcagtgcactacagaactttgt 65
>34003_ssc-mir-152:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 gttctgtgatacactccgactc 35
||||||||||||||||||||||
Sbjct: 9 gttctgtgatacactccgactc 30
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 45 gcagtcagtgcattacagaactt 67
||||||||||||| |||||||||
Sbjct: 41 gcagtcagtgcatgacagaactt 63
>25499_pma-mir-152a:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 43 ttgcagtcagtgcattacagaactt 67
||||||||||||||| |||||||||
Sbjct: 52 ttgcagtcagtgcatgacagaactt 76
>27400_mdo-mir-152:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 14 gttctgtgatacactccgact 34
|||||||||||||||||||||
Sbjct: 11 gttctgtgatacactccgact 31
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 45 gcagtcagtgcattacagaactt 67
||||||||||||| |||||||||
Sbjct: 43 gcagtcagtgcatgacagaactt 65
>25798_xtr-mir-148b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 agtcagtgcattacagaactttgt 70
||||||||||| ||||||||||||
Sbjct: 58 agtcagtgcatcacagaactttgt 81
>26724_cfa-mir-148b:mirbase
Length = 61
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 agtcagtgcattacagaactttgt 70
||||||||||| ||||||||||||
Sbjct: 38 agtcagtgcatcacagaactttgt 61
>27051_eca-mir-148b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 agtcagtgcattacagaactttgt 70
||||||||||| ||||||||||||
Sbjct: 50 agtcagtgcatcacagaactttgt 73
>27052_eca-mir-148b:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 agtcagtgcattacagaactttgt 70
||||||||||| ||||||||||||
Sbjct: 50 agtcagtgcatcacagaactttgt 73
>27397_mdo-mir-148:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 agtcagtgcattacagaactttgt 70
|||||||||| |||||||||||||
Sbjct: 42 agtcagtgcactacagaactttgt 65
>27757_mml-mir-148b:mirbase
Length = 99
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 agtcagtgcattacagaactttgt 70
||||||||||| ||||||||||||
Sbjct: 61 agtcagtgcatcacagaactttgt 84
>28472_hsa-mir-148b:mirbase
Length = 99
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 agtcagtgcattacagaactttgt 70
||||||||||| ||||||||||||
Sbjct: 61 agtcagtgcatcacagaactttgt 84
>30243_ptr-mir-148b:mirbase
Length = 98
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 agtcagtgcattacagaactttgt 70
||||||||||| ||||||||||||
Sbjct: 61 agtcagtgcatcacagaactttgt 84
>30856_ppy-mir-148b:mirbase
Length = 99
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 agtcagtgcattacagaactttgt 70
||||||||||| ||||||||||||
Sbjct: 61 agtcagtgcatcacagaactttgt 84
>31506_oan-mir-148:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 agtcagtgcattacagaactttgt 70
|||||||||| |||||||||||||
Sbjct: 50 agtcagtgcactacagaactttgt 73
>31883_mmu-mir-148b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 agtcagtgcattacagaactttgt 70
||||||||||| ||||||||||||
Sbjct: 59 agtcagtgcatcacagaactttgt 82
>32755_rno-mir-148b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 agtcagtgcattacagaactttgt 70
||||||||||| ||||||||||||
Sbjct: 59 agtcagtgcatcacagaactttgt 82
>32756_rno-mir-148b:mirbase
Length = 97
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 agtcagtgcattacagaactttgt 70
||||||||||| ||||||||||||
Sbjct: 59 agtcagtgcatcacagaactttgt 82
>33236_bta-mir-148b:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 agtcagtgcattacagaactttgt 70
||||||||||| ||||||||||||
Sbjct: 52 agtcagtgcatcacagaactttgt 75
>33999_ssc-mir-148b:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 47 agtcagtgcattacagaactttgt 70
||||||||||| ||||||||||||
Sbjct: 47 agtcagtgcatcacagaactttgt 70
