miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34607_fru-mir-152:mirbase
Length = 71
Score = 56.0 bits (28), Expect = 4e-09
Identities = 58/67 (86%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 16 aagttctgtgatacactcagactttgaat--cagtggtagtcagtgcatgacagaacttt 73
|||||||||||||||||| |||| ||||| | || |||||||||||| ||||||||||
Sbjct: 5 aagttctgtgatacactctgactgtgaatgtctatgctagtcagtgcataacagaacttt 64
Query: 74 ggcccgg 80
| |||||
Sbjct: 65 gtcccgg 71
>34754_tni-mir-152:mirbase
Length = 85
Score = 56.0 bits (28), Expect = 4e-09
Identities = 58/67 (86%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 16 aagttctgtgatacactcagactttgaat--cagtggtagtcagtgcatgacagaacttt 73
|||||||||||||||||| |||| ||||| | || |||||||||||| ||||||||||
Sbjct: 19 aagttctgtgatacactctgactgtgaatggctatgctagtcagtgcataacagaacttt 78
Query: 74 ggcccgg 80
| |||||
Sbjct: 79 gtcccgg 85
>25798_xtr-mir-148b:mirbase
Length = 97
Score = 54.0 bits (27), Expect = 2e-08
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 16 aagttctgtgatacactcagactttgaatcagtggtagtcagtgcatgacagaactttg 74
||||||||| |||||||| | || ||| | ||||| ||||||||||| |||||||||||
Sbjct: 22 aagttctgttatacactccggctgtgagtaagtggaagtcagtgcatcacagaactttg 80
>27400_mdo-mir-152:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 48/55 (87%)
Strand = Plus / Plus
Query: 18 gttctgtgatacactcagactttgaatcagtggtagtcagtgcatgacagaactt 72
|||||||||||||||| ||||| || || | | |||||||||||||||||||||
Sbjct: 11 gttctgtgatacactccgacttagactctggagcagtcagtgcatgacagaactt 65
>30247_ptr-mir-152:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 6e-08
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 15 caagttctgtgatacactcagactttgaatcagtggtagtcagtgcatgacagaactttg 74
||||||||||||||||||| |||| | || | | ||||||||||||||||||||| |
Sbjct: 14 caagttctgtgatacactccgactcgggctctggagcagtcagtgcatgacagaacttgg 73
Query: 75 gcccgg 80
||||||
Sbjct: 74 gcccgg 79
>27762_mml-mir-152:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactttggcccgg 80
||||||||||||||||||||| |||||||
Sbjct: 52 agtcagtgcatgacagaacttgggcccgg 80
>28478_hsa-mir-152:mirbase
Length = 87
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactttggcccgg 80
||||||||||||||||||||| |||||||
Sbjct: 52 agtcagtgcatgacagaacttgggcccgg 80
>31888_mmu-mir-152:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactttggcccgg 80
||||||||||||||||||||| |||||||
Sbjct: 45 agtcagtgcatgacagaacttgggcccgg 73
>32759_rno-mir-152:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactttggcccgg 80
||||||||||||||||||||| |||||||
Sbjct: 51 agtcagtgcatgacagaacttgggcccgg 79
>33239_bta-mir-152:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactttggcccgg 80
||||||||||||||||||||| |||||||
Sbjct: 51 agtcagtgcatgacagaacttgggcccgg 79
>34003_ssc-mir-152:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactttggcccgg 80
||||||||||||||||||||| |||||||
Sbjct: 43 agtcagtgcatgacagaacttgggcccgg 71
>33784_bta-mir-2957:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 52 agtcagtgcatgacagaactttggcccg 79
||||||||||||||||||||| ||||||
Sbjct: 28 agtcagtgcatgacagaacttgggcccg 1
>34321_dre-mir-148:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 4e-06
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 16 aagttctgtgatacactcagactttgaatcagtggtagtcagtgcatgacagaactttg 74
|||||||||||||||||| |||| ||||| | | ||||||||||| |||||||||||
Sbjct: 12 aagttctgtgatacactccgactctgaat-gtttgcagtcagtgcattacagaactttg 69
>25499_pma-mir-152a:mirbase
Length = 92
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactt 72
|||||||||||||||||||||
Sbjct: 56 agtcagtgcatgacagaactt 76
>26728_cfa-mir-152:mirbase
Length = 59
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactt 72
|||||||||||||||||||||
Sbjct: 37 agtcagtgcatgacagaactt 57
>26724_cfa-mir-148b:mirbase
Length = 61
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactttg 74
||||||||||| |||||||||||
Sbjct: 38 agtcagtgcatcacagaactttg 60
>27051_eca-mir-148b:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactttg 74
||||||||||| |||||||||||
Sbjct: 50 agtcagtgcatcacagaactttg 72
>27052_eca-mir-148b:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactttg 74
||||||||||| |||||||||||
Sbjct: 50 agtcagtgcatcacagaactttg 72
>27757_mml-mir-148b:mirbase
Length = 99
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactttg 74
||||||||||| |||||||||||
Sbjct: 61 agtcagtgcatcacagaactttg 83
>28472_hsa-mir-148b:mirbase
Length = 99
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactttg 74
||||||||||| |||||||||||
Sbjct: 61 agtcagtgcatcacagaactttg 83
>30243_ptr-mir-148b:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactttg 74
||||||||||| |||||||||||
Sbjct: 61 agtcagtgcatcacagaactttg 83
>30856_ppy-mir-148b:mirbase
Length = 99
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactttg 74
||||||||||| |||||||||||
Sbjct: 61 agtcagtgcatcacagaactttg 83
>31883_mmu-mir-148b:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactttg 74
||||||||||| |||||||||||
Sbjct: 59 agtcagtgcatcacagaactttg 81
>32755_rno-mir-148b:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactttg 74
||||||||||| |||||||||||
Sbjct: 59 agtcagtgcatcacagaactttg 81
>32756_rno-mir-148b:mirbase
Length = 97
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactttg 74
||||||||||| |||||||||||
Sbjct: 59 agtcagtgcatcacagaactttg 81
>33236_bta-mir-148b:mirbase
Length = 90
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactttg 74
||||||||||| |||||||||||
Sbjct: 52 agtcagtgcatcacagaactttg 74
>33999_ssc-mir-148b:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactttg 74
||||||||||| |||||||||||
Sbjct: 47 agtcagtgcatcacagaactttg 69
>34606_fru-mir-148:mirbase
Length = 79
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 16 aagttctgtgatacactcagact 38
||||||||||||||||| |||||
Sbjct: 12 aagttctgtgatacacttagact 34
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactttg 74
||||||||||| |||||||||||
Sbjct: 47 agtcagtgcattacagaactttg 69
>34753_tni-mir-148:mirbase
Length = 66
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 52 agtcagtgcatgacagaactttg 74
||||||||||| |||||||||||
Sbjct: 41 agtcagtgcattacagaactttg 63
