miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25972_gga-mir-153:mirbase
Length = 87
Score = 153 bits (77), Expect = 2e-38
Identities = 80/81 (98%)
Strand = Plus / Plus
Query: 1 ggttgccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtca 60
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4 ggttgccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtca 63
Query: 61 caaaagtgatcattggaaact 81
|||||||||||||||||||||
Sbjct: 64 caaaagtgatcattggaaact 84
>27402_mdo-mir-153-2:mirbase
Length = 87
Score = 145 bits (73), Expect = 5e-36
Identities = 79/81 (97%)
Strand = Plus / Plus
Query: 1 ggttgccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtca 60
||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 4 ggttgccggtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtca 63
Query: 61 caaaagtgatcattggaaact 81
|||||||||||||||||||||
Sbjct: 64 caaaagtgatcattggaaact 84
>27764_mml-mir-153-2:mirbase
Length = 87
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 5 gccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaa 64
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 8 gccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaa 67
Query: 65 agtgatcattggaaact 81
|||||||||||||||||
Sbjct: 68 agtgatcattggaaact 84
>28219_mne-mir-153-2:mirbase
Length = 87
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 5 gccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaa 64
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 8 gccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaa 67
Query: 65 agtgatcattggaaact 81
|||||||||||||||||
Sbjct: 68 agtgatcattggaaact 84
>28311_ggo-mir-153:mirbase
Length = 87
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 5 gccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaa 64
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 8 gccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaa 67
Query: 65 agtgatcattggaaact 81
|||||||||||||||||
Sbjct: 68 agtgatcattggaaact 84
>28480_hsa-mir-153-2:mirbase
Length = 87
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 5 gccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaa 64
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 8 gccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaa 67
Query: 65 agtgatcattggaaact 81
|||||||||||||||||
Sbjct: 68 agtgatcattggaaact 84
>30248_ptr-mir-153:mirbase
Length = 86
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 5 gccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaa 64
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 8 gccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaa 67
Query: 65 agtgatcattggaaact 81
|||||||||||||||||
Sbjct: 68 agtgatcattggaaact 84
>30862_ppy-mir-153-2:mirbase
Length = 87
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 5 gccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaa 64
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 8 gccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaa 67
Query: 65 agtgatcattggaaact 81
|||||||||||||||||
Sbjct: 68 agtgatcattggaaact 84
>32760_rno-mir-153:mirbase
Length = 87
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 5 gccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaa 64
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 8 gccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaa 67
Query: 65 agtgatcattggaaact 81
|||||||||||||||||
Sbjct: 68 agtgatcattggaaact 84
>33241_bta-mir-153-2:mirbase
Length = 87
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 5 gccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaa 64
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 8 gccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaa 67
Query: 65 agtgatcattggaaact 81
|||||||||||||||||
Sbjct: 68 agtgatcattggaaact 84
>34004_ssc-mir-153:mirbase
Length = 87
Score = 145 bits (73), Expect = 5e-36
Identities = 76/77 (98%)
Strand = Plus / Plus
Query: 5 gccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaa 64
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 8 gccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaa 67
Query: 65 agtgatcattggaaact 81
|||||||||||||||||
Sbjct: 68 agtgatcattggaaact 84
>26729_cfa-mir-153:mirbase
Length = 80
Score = 137 bits (69), Expect = 1e-33
Identities = 72/73 (98%)
Strand = Plus / Plus
Query: 5 gccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaa 64
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 8 gccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaa 67
Query: 65 agtgatcattgga 77
|||||||||||||
Sbjct: 68 agtgatcattgga 80
>25801_xtr-mir-153-2:mirbase
Length = 86
Score = 135 bits (68), Expect = 5e-33
Identities = 77/80 (96%)
Strand = Plus / Plus
Query: 2 gttgccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcac 61
|||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 5 gttgccagtgtcatttttgtgacgttgcagctagtaatatgagcccagttgcatagtcac 64
Query: 62 aaaagtgatcattggaaact 81
||||||||| ||||||||||
Sbjct: 65 aaaagtgattattggaaact 84
>26480_tgu-mir-153-1:mirbase
Length = 72
Score = 135 bits (68), Expect = 5e-33
Identities = 71/72 (98%)
Strand = Plus / Plus
Query: 10 tgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaaagtga 69
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 1 tgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtga 60
Query: 70 tcattggaaact 81
||||||||||||
Sbjct: 61 tcattggaaact 72
>34608_fru-mir-153a:mirbase
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 6 ccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaaa 65
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 ccagtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaa 60
Query: 66 gtgatcattgg 76
|||||||||||
Sbjct: 61 gtgatcattgg 71
>27056_eca-mir-153:mirbase
Length = 67
Score = 125 bits (63), Expect = 5e-30
Identities = 66/67 (98%)
Strand = Plus / Plus
Query: 9 gtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaaagtg 68
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1 gtgtcatttttgtgatgttgcagctagtaatatgagcccagttgcatagtcacaaaagtg 60
Query: 69 atcattg 75
|||||||
Sbjct: 61 atcattg 67
>31889_mmu-mir-153:mirbase
Length = 69
Score = 117 bits (59), Expect = 1e-27
Identities = 65/67 (97%)
Strand = Plus / Plus
Query: 9 gtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaaagtg 68
||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 3 gtgtcatttttgtgacgttgcagctagtaatatgagcccagttgcatagtcacaaaagtg 62
Query: 69 atcattg 75
|||||||
Sbjct: 63 atcattg 69
>34755_tni-mir-153a:mirbase
Length = 72
Score = 103 bits (52), Expect = 2e-23
Identities = 68/72 (94%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 6 ccagtgtcatttt-tgtgatgttgcagctagttatatgagcccagttgcatagtcacaaa 64
||||||||||||| |||||||||||||||||| |||| |||| |||||||||||||||||
Sbjct: 1 ccagtgtcattttttgtgatgttgcagctagtaatataagccaagttgcatagtcacaaa 60
Query: 65 agtgatcattgg 76
||||||||||||
Sbjct: 61 agtgatcattgg 72
>34326_dre-mir-153c:mirbase
Length = 151
Score = 77.8 bits (39), Expect = 1e-15
Identities = 64/71 (90%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 6 ccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaaa 65
||||||||||||||||||| ||||||||||| | || | ||||||||||||||||||||
Sbjct: 38 ccagtgtcatttttgtgat-ttgcagctagtagtctgggtccagttgcatagtcacaaaa 96
Query: 66 gtgatcattgg 76
||||||||||
Sbjct: 97 atgatcattgg 107
>27763_mml-mir-153-1:mirbase
Length = 90
Score = 73.8 bits (37), Expect = 2e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 4 tgccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaa 63
||||||||||||||||||||| | ||||||||| | | | ||||||||||||||||||
Sbjct: 9 tgccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaa 67
Query: 64 aagtgatcattgg 76
|||||||||||||
Sbjct: 68 aagtgatcattgg 80
>28218_mne-mir-153-1:mirbase
Length = 90
Score = 73.8 bits (37), Expect = 2e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 4 tgccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaa 63
||||||||||||||||||||| | ||||||||| | | | ||||||||||||||||||
Sbjct: 9 tgccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaa 67
Query: 64 aagtgatcattgg 76
|||||||||||||
Sbjct: 68 aagtgatcattgg 80
>28479_hsa-mir-153-1:mirbase
Length = 90
Score = 73.8 bits (37), Expect = 2e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 4 tgccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaa 63
||||||||||||||||||||| | ||||||||| | | | ||||||||||||||||||
Sbjct: 9 tgccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaa 67
Query: 64 aagtgatcattgg 76
|||||||||||||
Sbjct: 68 aagtgatcattgg 80
>30861_ppy-mir-153:mirbase
Length = 90
Score = 73.8 bits (37), Expect = 2e-14
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 4 tgccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaa 63
||||||||||||||||||||| | ||||||||| | | | ||||||||||||||||||
Sbjct: 9 tgccagtgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaa 67
Query: 64 aagtgatcattgg 76
|||||||||||||
Sbjct: 68 aagtgatcattgg 80
>26481_tgu-mir-153-2:mirbase
Length = 72
Score = 67.9 bits (34), Expect = 1e-12
Identities = 59/66 (89%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 11 gtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaaagtgat 70
|||||||||||||| ||||||||||| || || |||||||||||||||||||||||||
Sbjct: 3 gtcatttttgtgat-ttgcagctagtaatctggctccagttgcatagtcacaaaagtgat 61
Query: 71 cattgg 76
| ||||
Sbjct: 62 cgttgg 67
>25501_pma-mir-153-1:mirbase
Length = 76
Score = 65.9 bits (33), Expect = 4e-12
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 10 tgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaaagtga 69
||||||||||||||| |||||||| ||| || || ||||||||||||||||||||||
Sbjct: 8 tgtcatttttgtgat-ttgcagctggtttcattagtaaagttgcatagtcacaaaagtga 66
Query: 70 tcattggaa 78
|||||||||
Sbjct: 67 tcattggaa 75
>27401_mdo-mir-153-1:mirbase
Length = 90
Score = 65.9 bits (33), Expect = 4e-12
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 4 tgccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaa 63
||||||||||||||||||||| | ||||||||| | || |||||||||||||||||
Sbjct: 9 tgccagtgtcatttttgtgatct-gcagctagtattctggcttcagttgcatagtcacaa 67
Query: 64 aagtgatcattgg 76
|||||||||||||
Sbjct: 68 aagtgatcattgg 80
>31508_oan-mir-153:mirbase
Length = 145
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 46 ccagttgcatagtcacaaaagtgatcattgg 76
|||||||||||||||||||||||||||||||
Sbjct: 92 ccagttgcatagtcacaaaagtgatcattgg 122
>25503_pma-mir-153-3:mirbase
Length = 78
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 44 gcccagttgcatagtcacaaaagtgatcat 73
||||||||||||||||||||||||||||||
Sbjct: 43 gcccagttgcatagtcacaaaagtgatcat 72
>27057_eca-mir-153-2:mirbase
Length = 69
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 46 ccagttgcatagtcacaaaagtgatcattg 75
||||||||||||||||||||||||||||||
Sbjct: 40 ccagttgcatagtcacaaaagtgatcattg 69
>33240_bta-mir-153-1:mirbase
Length = 90
Score = 58.0 bits (29), Expect = 1e-09
Identities = 60/69 (86%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 4 tgccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaa 63
|||||| |||||||||||||| | ||||||||| | | | ||||||||||||||||||
Sbjct: 9 tgccagcgtcatttttgtgatct-gcagctagtattctcactccagttgcatagtcacaa 67
Query: 64 aagtgatca 72
|||||||||
Sbjct: 68 aagtgatca 76
>25800_xtr-mir-153-1:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 47 cagttgcatagtcacaaaagtgatcat 73
|||||||||||||||||||||||||||
Sbjct: 50 cagttgcatagtcacaaaagtgatcat 76
>34609_fru-mir-153b:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 6 ccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaaa 65
||||||||||||||||| | ||||||||||| | || ||||||||||||||||||||
Sbjct: 7 ccagtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaa 65
Query: 66 gtgatcattgg 76
||| ||||||
Sbjct: 66 atgagcattgg 76
>34756_tni-mir-153b:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 61/71 (85%), Gaps = 1/71 (1%)
Strand = Plus / Plus
Query: 6 ccagtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaaa 65
||||||||||||||||| | ||||||||||| | || ||||||||||||||||||||
Sbjct: 7 ccagtgtcatttttgtggt-ttgcagctagtactctggctccagttgcatagtcacaaaa 65
Query: 66 gtgatcattgg 76
||| ||||||
Sbjct: 66 atgagcattgg 76
>25502_pma-mir-153-2:mirbase
Length = 76
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 48 agttgcatagtcacaaaagtgatcat 73
||||||||||||||||||||||||||
Sbjct: 45 agttgcatagtcacaaaagtgatcat 70
>34826_spu-mir-153:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 48 agttgcatagtcacaaaagtgat 70
|||||||||||||||||||||||
Sbjct: 59 agttgcatagtcacaaaagtgat 81
>38870_lgi-mir-153:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 ttgcatagtcacaaaagtgatc 71
||||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgatc 82
>38755_cte-mir-153:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 50 ttgcatagtcacaaaagtgatc 71
||||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgatc 82
>24838_cin-mir-153:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 48 agttgcatagtcacaaaagtgatcat 73
||||||||||| ||||||||||||||
Sbjct: 64 agttgcatagtaacaaaagtgatcat 89
>34325_dre-mir-153b:mirbase
Length = 148
Score = 42.1 bits (21), Expect = 6e-05
Identities = 49/57 (85%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 9 gtgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaaa 65
|||||||||||||| | ||||||||||| | || ||||||||||||||||||||
Sbjct: 41 gtgtcatttttgtggt-ttgcagctagtagtctggttccagttgcatagtcacaaaa 96
>34882_sko-mir-153:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 ttgcatagtcacaaaagtgat 70
|||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgat 81
>34974_isc-mir-153:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 ttgcatagtcacaaaagtgat 70
|||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgat 81
>35014_dpu-mir-153:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 ttgcatagtcacaaaagtgat 70
|||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgat 81
>38118_bma-mir-153:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 50 ttgcatagtcacaaaagtgat 70
|||||||||||||||||||||
Sbjct: 50 ttgcatagtcacaaaagtgat 70
